| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,821,776 – 3,821,890 |
| Length | 114 |
| Max. P | 0.703608 |
| Location | 3,821,776 – 3,821,890 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -17.07 |
| Energy contribution | -17.15 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3821776 114 - 20766785 -CCUUCCUUUCCGCCCGCUCCACC-CGCUUCACCCCACUAAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA -...........((((((......-.((.(((((((((((((..........))))).)))))....))).))..........)))))).......(((((.........))))). ( -27.33) >DroSec_CAF1 78245 115 - 1 -UCUUCCUUUCCGCCCGCUCCACCCCUCUUCACCCCACUGAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA -...........((((((..............((((((..((..........))..).)))))....((((.....))))...)))))).......(((((.........))))). ( -26.60) >DroSim_CAF1 94855 105 - 1 -CCUUCCUUUCCGCCCGCUCCAC----------CCCACUGAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA -...........((((((....(----------(((((..((..........))..).)))))....((((.....))))...)))))).......(((((.........))))). ( -26.60) >DroEre_CAF1 79126 105 - 1 -CCUCCCUCUCCACCCGCUG----------CCUCCUCCUGAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA -............(((((.(----------((((..((.................))..)))))...((((.....))))...)))))........(((((.........))))). ( -21.23) >DroYak_CAF1 75792 112 - 1 GACCCCCUCUCCACCCGCUUU----CGUUCCACCCUCCUGAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA .............(((((...----.((((.........))))....((((..(((((....))))).))))...........)))))........(((((.........))))). ( -22.00) >DroAna_CAF1 76458 98 - 1 CGCCCCCUUGCCCCUUG------------------CAUUCAGCCAUCCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA .(((((..(((.....)------------------))...(((((.........))))))))))......(((((..(((.(((..(((((....))))).))).)))..))))). ( -27.30) >consensus _CCUCCCUUUCCGCCCGCUCC_________CACCCCACUGAACCCAUCAUCCUUUGGCUGGGGCUAAUGAUGUCAAAUUACUUGCGGGCAUUUUUAUGUCAUAAUUAAACUGACAA .............(((((........................(((((((.....))).)))).....((((.....))))...)))))........(((((.........))))). (-17.07 = -17.15 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:52 2006