Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,815,310 – 3,815,440 |
Length | 130 |
Max. P | 0.946677 |
Location | 3,815,310 – 3,815,420 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -22.05 |
Energy contribution | -22.16 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.54 |
Structure conservation index | 0.85 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3815310 110 + 20766785 -CUGUCACUUUUUGCCACACCCCCGGUUUUCGGCCAA-AAUAAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGAGAGUUUCGUAUUCGC-- -.......((((.(((..(((...)))....))).))-))...........((((((((.(((((((((((..............))))))))))).)))))).))......-- ( -22.74) >DroPse_CAF1 67270 106 + 1 -CCCUCCCGUUUUCUCGCACUC-----UUUCAGCCAAAAAUAAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUGUC-- -.......(((((...((....-----.....))..)))))....((((..((((((((((((((((((((..............)))))))))))))))))).)).)))).-- ( -24.14) >DroWil_CAF1 114006 113 + 1 CCACCCACUUGGGGCCCCACUCUUUCCUCUCGGGGGC-AAAAGAAAUAAGAACAAAAUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAAUUUCGUAUUCGUAU ...(((....)))(((((..............)))))-....(((((..........((((((((((((((..............))))))))))))))))))).......... ( -32.18) >DroYak_CAF1 68781 109 + 1 -CUGUCACUUUUUGCCACACCCCC-AUUUUUGGCCAG-AAUAAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUCGC-- -.......((((.((((.......-.....)))).))-))...........((((((((((((((((((((..............)))))))))))))))))).))......-- ( -28.04) >DroAna_CAF1 68504 109 + 1 -CUGUCACUUUUU-CCAUUCCUCG-UAUUUCGGCCAAAAAUAAAAAUAAGAACAAACUCGCGGAAUUUGUAUGAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUCGC-- -............-..........-..........................((((((((((((((((((((..............)))))))))))))))))).))......-- ( -23.84) >DroPer_CAF1 66688 106 + 1 -CCCUCUCGUUUUCUCGCACUC-----UUUCAGCCAAAAAUAAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUGUC-- -...(((..((((.........-----...............))))..)))((((((((((((((((((((..............)))))))))))))))))).))......-- ( -24.30) >consensus _CUCUCACUUUUUGCCACACCCC____UUUCGGCCAA_AAUAAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUCGC__ ...................................................((((((((((((((((((((..............)))))))))))))))))).))........ (-22.05 = -22.16 + 0.11)
Location | 3,815,348 – 3,815,440 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.98 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -16.37 |
Energy contribution | -15.62 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.21 |
Mean z-score | -2.76 |
Structure conservation index | 0.76 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3815348 92 + 20766785 U------AAAAAUAAGAACAAGCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGAGAGUUUCGUAUUCGCCUCGCAUUGUACACAUGUAC .------........(.((((((..(((((.(((((((....)))))))..((((((...(....).)))))))))))...)).)))).)........ ( -20.10) >DroVir_CAF1 84966 89 + 1 UGUUCC-AAAAAUAAGAACAAAAUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAU-UCGCGAUU-------UCGGUUCGCAUUGUAUGUAUGCAC ......-........((((.((((((((.((((((((..............)))))))-))))))))-------)..))))((((.......)))).. ( -23.94) >DroGri_CAF1 73036 90 + 1 UGUCCCAAAAAAUAAGAACAAAAUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAU-UCGCGAUU-------UCAGCUCGUAUUGUAUGUAUCCAU .....((...((((.((.(.((((((((.((((((((..............)))))))-))))))))-------)..).)).))))...))....... ( -16.74) >DroSec_CAF1 71607 91 + 1 U------AAAAAUAAGAACA-GCUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUCGCCUCGCAUUAUACACAUGUAC .------........(((..-((((((((((((((((..............)))))))))))))))))))((((..((...))...))))........ ( -24.74) >DroMoj_CAF1 104662 89 + 1 UGUCCA-AAAAAUAAGAACAAAAUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAU-UCGCGAUU-------UCGGCUCGUAUUGUAUGUAUGCAU ......-........((.(.((((((((.((((((((..............)))))))-))))))))-------).)..))((((.......)))).. ( -18.74) >DroAna_CAF1 68541 91 + 1 U------AAAAAUAAGAACAAACUCGCGGAAUUUGUAUGAAAAUGCAAAAUUACGAAUUUCGCGAGUUUCGUAUUCGCCUCGCAUUGUCCACAUGUA- .------..........((((((((((((((((((((..............)))))))))))))))))).)).........((((.(....))))).- ( -24.64) >consensus U______AAAAAUAAGAACAAAAUCGCGGAAUUUGUAUAAAAAUGCAAAAUUACGAAU_UCGCGAGU_______UCGCCUCGCAUUGUACACAUGCAC .....................((((((((.(((((((..............))))))).))))))))..............((((.......)))).. (-16.37 = -15.62 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:51 2006