Locus 805

Sequence ID 2R_DroMel_CAF1
Location 3,815,096 – 3,815,193
Length 97
Max. P 0.956535
window1410

overview

Window 0

Location 3,815,096 – 3,815,193
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 81.86
Mean single sequence MFE -25.14
Consensus MFE -16.06
Energy contribution -16.02
Covariance contribution -0.04
Combinations/Pair 1.07
Mean z-score -2.55
Structure conservation index 0.64
SVM decision value 1.47
SVM RNA-class probability 0.956535
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3815096 97 - 20766785
GCUGCUGACCAAAGCAGCGAACCACACGCGAUAAUGGUCAAAAUAAUAAAAAUGAACAGCUGAGCAUCAGCCAGGGAACCAGGGAUCCU--GGGAGCCA
.(((.((((((.....(((.......))).....))))))..................((((.....)))))))((..(((((...)))--))...)). ( -28.30)
>DroVir_CAF1 84724 74 - 1
GUUGCUGACCAAAGCAGCGAACCACAUGCGAUAAUGGCCAAAAUAAUAAAAAUCAACAGCUGAGCGGCAGCAGC-------------------------
(((((((.((....((((......(((......)))......................))))...)))))))))------------------------- ( -16.49)
>DroSec_CAF1 71367 97 - 1
GCUGCUGACCAAAGCAGCGAACCACACGCGAUAAUGGUCAAAAUAAUAAAAAUGAACAGCUGAGCAUCAGCCAGGGAACCAGGGAUCCU--GGGAGCCA
.(((.((((((.....(((.......))).....))))))..................((((.....)))))))((..(((((...)))--))...)). ( -28.30)
>DroSim_CAF1 86726 97 - 1
GUUGCUGACCAAAGCAGCGAACCACACGCGAUAAUGGUCAAAAUAAUAAAAAUGAACAGCUGAGCAUCAGCCAGGGAACCAGGGAUCCU--GGGAGCCA
.....((((((.....(((.......))).....))))))..................((((.....))))...((..(((((...)))--))...)). ( -26.50)
>DroYak_CAF1 68595 91 - 1
GCUGCUGACCAAAGCAGCGAACCACACGCGAUAAUGGUCAAAAUAAUAAAAAUGAACAGCUGAGCAUCAGCAUCAGCAUCAGC------AU--CAGCCA
((((.((((((.....(((.......))).....))))))..................(((((((....)).)))))..))))------..--...... ( -26.10)
>consensus
GCUGCUGACCAAAGCAGCGAACCACACGCGAUAAUGGUCAAAAUAAUAAAAAUGAACAGCUGAGCAUCAGCCAGGGAACCAGGGAUCCU__GGGAGCCA
((((((......))))))((.(((..........)))))...................((((.....))))............................ (-16.06 = -16.02 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:50 2006