Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,334,010 – 1,334,170 |
Length | 160 |
Max. P | 0.974704 |
Location | 1,334,010 – 1,334,130 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -29.06 |
Energy contribution | -29.10 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.17 |
Structure conservation index | 0.96 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1334010 120 + 20766785 CGUGGCUAGCUCGUUUGUUACGUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((((((......)))).(((((.(((....))).)).((((..((.....))...))))..)))....)))))....((((((.....))))))(((......))).......... ( -30.60) >DroSec_CAF1 52540 120 + 1 CGUGGCUAGCUCAUUUGUUACGUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((((((......)))).(((((.(((....))).)).((((..((.....))...))))..)))....)))))....((((((.....))))))(((......))).......... ( -30.60) >DroSim_CAF1 30695 120 + 1 CGUGGCUAGCUCGUUUGUUACCUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((((((......))))........((....))((((.((((..((.....))...))))...))))..)))))....((((((.....))))))(((......))).......... ( -30.10) >DroEre_CAF1 34034 120 + 1 CGUGGCCAGCUCGUUUGUUACGUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGUCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((......(((..(((((.(((.(((....))).))).....)))))..)))...(((...)))....)))))....((((((.....))))))(((......))).......... ( -29.40) >DroYak_CAF1 19887 120 + 1 CGUGGCUAGCUCGUUUGUUACGUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((((((......)))).(((((.(((....))).)).((((..((.....))...))))..)))....)))))....((((((.....))))))(((......))).......... ( -30.60) >consensus CGUGGCUAGCUCGUUUGUUACGUUACUCGCUUAUGCGUGUACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAG .(((((((((......))))........((....))((((.((((..((.....))...))))...))))..)))))....((((((.....))))))(((......))).......... (-29.06 = -29.10 + 0.04)
Location | 1,334,010 – 1,334,130 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -33.76 |
Consensus MFE | -33.48 |
Energy contribution | -33.52 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.64 |
Structure conservation index | 0.99 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1334010 120 - 20766785 CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAACGUAACAAACGAGCUAGCCACG ..(((....)))..........((((((.....))))))....(((((((((((...((((.((((.....))))))))...)))))).(((..((..........))..))).))))). ( -35.20) >DroSec_CAF1 52540 120 - 1 CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAACGUAACAAAUGAGCUAGCCACG ..(((....)))..........((((((.....))))))....(((((((((((...((((.((((.....))))))))...)))))).(((..((..........))..))).))))). ( -33.70) >DroSim_CAF1 30695 120 - 1 CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAAGGUAACAAACGAGCUAGCCACG ..(((....)))..........((((((.....))))))....(((((((((((...((((.((((.....))))))))...)))))).(((..((..(....)..))..))).))))). ( -36.00) >DroEre_CAF1 34034 120 - 1 CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGACGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAACGUAACAAACGAGCUGGCCACG ..((......((((((((((((((((((.....)))))...((((((((...(((...)))..))))))))...)))(((((.(((....))).)).)))))))))..))))..)).... ( -28.70) >DroYak_CAF1 19887 120 - 1 CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAACGUAACAAACGAGCUAGCCACG ..(((....)))..........((((((.....))))))....(((((((((((...((((.((((.....))))))))...)))))).(((..((..........))..))).))))). ( -35.20) >consensus CUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGUACACGCAUAAGCGAGUAACGUAACAAACGAGCUAGCCACG ..(((....)))..........((((((.....))))))....(((((((((((...((((.((((.....))))))))...)))))).(((..((..........))..))).))))). (-33.48 = -33.52 + 0.04)
Location | 1,334,050 – 1,334,170 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -22.92 |
Energy contribution | -22.76 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.97 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1334050 120 + 20766785 ACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGACAUUAUUAUCACACACACGAUAAACUAAGAGA .((((..((.....))...))))..(((...(((.......((((((.....))))))(((......))).........))).))).......(((((........)))))......... ( -23.30) >DroSec_CAF1 52580 120 + 1 ACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGCCAUUAUUAUCACACACACGAUAAACUAAGAGA ..(((.(((........))).....(((...(((.......((((((.....))))))(((......))).........))).))))))....(((((........)))))......... ( -23.40) >DroSim_CAF1 30735 120 + 1 ACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGCCAUUAUUAUCACACACACGAUAAACUAAGAGA ..(((.(((........))).....(((...(((.......((((((.....))))))(((......))).........))).))))))....(((((........)))))......... ( -23.40) >DroEre_CAF1 34074 120 + 1 ACGGCUCGUAAAUAACAACGUCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGACAUUAUUAUCACACACACGAUAAACUAAGAGA ....(((............(((((...(...(((.......((((((.....))))))(((......)))......)))...).)))))....(((((........))))).....))). ( -24.00) >DroYak_CAF1 19927 120 + 1 ACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGUCAUUAUUAUCACACACACGAUAAACUAAGAGA .((((..((.....))...))))..(((((.(((.......((((((.....))))))(((......))).........))).)).)))....(((((........)))))......... ( -23.90) >consensus ACGGCUCGUAAAUAACAACGCCGAAGACACAUGCCACUUUAUGUCAAUUAUUUUGACAGCUAACAAGAGCAAAUAUGCAGCAGGUCGACAUUAUUAUCACACACACGAUAAACUAAGAGA .((((..((.....))...))))..(((...(((.......((((((.....))))))(((......))).........))).))).......(((((........)))))......... (-22.92 = -22.76 + -0.16)
Location | 1,334,050 – 1,334,170 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -30.84 |
Consensus MFE | -29.10 |
Energy contribution | -29.42 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.03 |
Mean z-score | -1.34 |
Structure conservation index | 0.94 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1334050 120 - 20766785 UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGUCGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGU .............((.((.((((((((((((((((((.(((..(......(((......)))((((((.....))))))....)..))).).....)))))))))))).))))).)))). ( -31.20) >DroSec_CAF1 52580 120 - 1 UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGGCGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGU ............(((((...((((((((..(((.(((((((..(......(((......)))((((((.....))))))....)..))).).))).)))..)))))))).)))))..... ( -30.10) >DroSim_CAF1 30735 120 - 1 UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGGCGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGU ............(((((...((((((((..(((.(((((((..(......(((......)))((((((.....))))))....)..))).).))).)))..)))))))).)))))..... ( -30.10) >DroEre_CAF1 34074 120 - 1 UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGUCGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGACGUUGUUAUUUACGAGCCGU .............((.((.((((((((((((((((((.(((..(......(((......)))((((((.....))))))....)..))).).....)))))))))))).))))).)))). ( -31.80) >DroYak_CAF1 19927 120 - 1 UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGACGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGU ............(((((...((((((((..(((.(((((((..(......(((......)))((((((.....))))))....)..))).).))).)))..)))))))).)))))..... ( -31.00) >consensus UCUCUUAGUUUAUCGUGUGUGUGAUAAUAAUGGCGACCUGCUGCAUAUUUGCUCUUGUUAGCUGUCAAAAUAAUUGACAUAAAGUGGCAUGUGUCUUCGGCGUUGUUAUUUACGAGCCGU ............(((((...((((((((..(((.(((((((..(......(((......)))((((((.....))))))....)..))).).))).)))..)))))))).)))))..... (-29.10 = -29.42 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:10 2006