| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,798,958 – 3,799,064 |
| Length | 106 |
| Max. P | 0.892317 |
| Location | 3,798,958 – 3,799,064 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -17.95 |
| Energy contribution | -17.87 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3798958 106 + 20766785 AGCCCGGAGAAACCGCAACCUAUGCAUGGUGGUCAGUUGGUGCUCGCUGACCGGAUCCAAUCCAAAUCCCCAGACCAAUGUC-AAUAC---CAAUGCCAAACCAAAUCCC .....(((......(((.....))).(((((((((((........)))))))((((...)))).........(((....)))-.....---....)))).......))). ( -24.00) >DroPse_CAF1 51318 108 + 1 ACCCCGGCGAAACCACAACCUGUGCAUGGUGGUCAGUGGCUGCUCACUGACCGGACCCAAUACCAAUCCCAAG-CCAAUGCCCCAUCUCCGCCUUCCCAAGCCAAAUCC- .....((((.....((.....))((((((((((((((((....)))))))))((........))........)-)).))))........))))................- ( -28.70) >DroSec_CAF1 55414 106 + 1 AGCCCGGAGAAACCGCAACCUAUGCAUGGUGGUCAGUUGGUACUCGCUGACCGGAUCCAAUCCCAAUCCGCAGACCAAUGCC-AAUAC---CAAUGCCAAACCAAAUCCC .....(((......(((.....))).(((((((..(((((((....(((..(((((.........)))))))).....))))-)))))---)...)))).......))). ( -24.60) >DroEre_CAF1 56702 100 + 1 AACCCGGAGAAACCGCAACCUAUGCAUGGUGGUCAGUUGGUGCUCGCUGACCGGAUCCAAUCC------CAAUCCCCAGACC-AAUAC---CAAUGCCAAGCCAAAUCCC .....(((......(((.....))).(((((((..(((((((....(((...((((.......------..)))).)))...-..)))---)))))))..))))..))). ( -22.70) >DroAna_CAF1 52412 95 + 1 ACCUGGGGGUAACCACAACCUGUGCACGGUGGUCAGUGGCUGCUCACUGACCGGACCCAAUCCGAAUCUCG------------AAAAC---CAAUCCCAAACCAAAUCCC .....(((((...(((.....)))...((((((((((((....)))))))))(((.....)))........------------...))---).)))))............ ( -28.10) >DroPer_CAF1 50476 108 + 1 ACCCCGGCAAAACCACAACCUGUGCAUGGUGGUCAGUGGCUGCUCACUGACCGGACCCAAUACCAAUCCCAAG-CCAAUGCCCCAUCUCCGCCUUCCCAAGCCAAAUCC- .....(((......((.....))((((((((((((((((....)))))))))((........))........)-)).))))...................)))......- ( -27.30) >consensus ACCCCGGAGAAACCACAACCUAUGCAUGGUGGUCAGUGGCUGCUCACUGACCGGACCCAAUCCCAAUCCCAAG_CCAAUGCC_AAUAC___CAAUCCCAAACCAAAUCCC .....(((....((...(((.......)))(((((((........))))))))).))).................................................... (-17.95 = -17.87 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:41 2006