Locus 798

Sequence ID 2R_DroMel_CAF1
Location 3,798,042 – 3,798,137
Length 95
Max. P 0.727933
window1400

overview

Window 0

Location 3,798,042 – 3,798,137
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.67
Mean single sequence MFE -15.14
Consensus MFE -10.88
Energy contribution -11.30
Covariance contribution 0.42
Combinations/Pair 1.07
Mean z-score -1.72
Structure conservation index 0.72
SVM decision value 0.42
SVM RNA-class probability 0.727933
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3798042 95 - 20766785
GCAAAUACUUCAACUGCAUUGUGCACUGAAUGCA-UCAGUUGAUUUUCCUGCACUCUUACCCCUCC-ACCCACCCUCUUCUGCCUUGCAUCCGCUGU
(((......(((((((....(((((.....))))-))))))))......)))..............-...................((....))... ( -15.50)
>DroSec_CAF1 54579 95 - 1
GCAAAUACUUCAACUGCAUUGUGCACUGAAUGCA-UCGGUUGAUUUUCCUGCACUUUUACCCCUAC-ACCCACCCUCUUCUCCUUUGCAUCCACUGU
(((......(((((((....(((((.....))))-))))))))......)))..............-.............................. ( -14.30)
>DroSim_CAF1 68100 95 - 1
GCAAAUACUUCAACUGCAUUGUGCACUGAAUGCA-UCAGUUGAUUUUCCUGCACUUUUACCCCUAC-ACCCACCCUCUUCACCCUUUCAUCCGCUGU
(((......(((((((....(((((.....))))-))))))))......)))..............-.............................. ( -15.00)
>DroEre_CAF1 55898 95 - 1
GCAAAUACUUCAACUGCAUUGUGCAUUAAAUGCA-UCAGUUGAUUUUGCAGCACUUUUCCCCCACC-ACACGCCCUCCUCCCACUUGCAUCCGCUGU
(((((....(((((((....((((((...)))))-)))))))).))))).................-...................((....))... ( -17.80)
>DroYak_CAF1 51469 95 - 1
GCAAAUACUUCAACUGCAUUGUGCACUGAAUGCA-UCGGUUGAAUUUACUGCACUUUUUACCCUCC-ACCCACCCGCUUCGCCCUUGCAUCCGCUGU
(((.....((((((((....(((((.....))))-))))))))).....)))..............-........((.........))......... ( -15.70)
>DroAna_CAF1 51895 97 - 1
GCAAAUAUAUCAAUUGCAAUGUGCCUGGAAUUCACUCGCUUGACUUUUAUGCACUUUUUCCCGCACUUCCCAUUCCUUUGCUAUUCACAACCGAUGU
......(((((.........((((.(((((.(((......))).))))).))))........(((.............)))...........))))) ( -12.52)
>consensus
GCAAAUACUUCAACUGCAUUGUGCACUGAAUGCA_UCAGUUGAUUUUCCUGCACUUUUACCCCUAC_ACCCACCCUCUUCCCCCUUGCAUCCGCUGU
(((......(((((((.....((((.....))))..)))))))......)))............................................. (-10.88 = -11.30 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:40 2006