Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,797,332 – 3,797,469 |
Length | 137 |
Max. P | 0.999813 |
Location | 3,797,332 – 3,797,432 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 72.47 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -11.54 |
Energy contribution | -11.34 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.35 |
Mean z-score | -2.14 |
Structure conservation index | 0.38 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3797332 100 + 20766785 CUGGCUUUUGGCGCAUUGUCAGCUGGAGCUUACCACUCAUUCAACUGCAACU------GCGUGCACAGCAAUUGCAACAGGAACUGCAGAUGCAACUGCAGCAGGA ..((((.(..((.........))..)))))..((.....(((...(((((.(------((.......))).)))))....)))((((((......))))))..)). ( -28.10) >DroSec_CAF1 53873 94 + 1 GUGGCUUUUGGCGCAUUGUCAGCUGGAGCUUACCACUCAUUCAACUGCAACU------GCGUGCACUGCAAUUGCAGCAGGAACUGCAGAUGCAGCUGC------A ..........((((((((.(((.((((............)))).)))))).)------))))((((((((.((((((......)))))).))))).)))------. ( -32.90) >DroSim_CAF1 67394 94 + 1 CUGGCUUUUGGCGCAUUGUCAGCUGAAGCUUACCACUCAUUCAACUGCAACU------GCGUGCACUGCAAUUGCAACAGGAACUGCAGAUGCAGCUGC------A ..........((((((((.(((.((((............)))).)))))).)------))))((((((((.(((((........))))).))))).)))------. ( -30.50) >DroEre_CAF1 55221 94 + 1 CUGGCUUUUGGCGCAUUGUCAGCUGGAGCUAACCACUCACUCAACUGCAACUGCAACUGCGCUUACUGCAGUUGCAGCAGAAACUGCAGCUGC------------A .........(((((((((.(((.((.((................)).)).)))))).))))))....((((((((((......))))))))))------------. ( -33.29) >DroWil_CAF1 85052 91 + 1 CCAUCUUUUGUUGCAACAUUGCACAAGGCUUAUCAUUCAUGCAAGUGCAAUUGCAAUUG---------GAAUUGCAAUCGCAACUGCUGAUGCUGUUGC------A ...(((...((((((..(((((((...((...........))..))))))))))))).)---------)).........(((((.((....)).)))))------. ( -27.90) >consensus CUGGCUUUUGGCGCAUUGUCAGCUGGAGCUUACCACUCAUUCAACUGCAACU______GCGUGCACUGCAAUUGCAACAGGAACUGCAGAUGCAGCUGC______A ..((((((.(((.........))))))))).....................................(((.(((((........))))).)))............. (-11.54 = -11.34 + -0.20)
Location | 3,797,332 – 3,797,432 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 72.47 |
Mean single sequence MFE | -35.76 |
Consensus MFE | -15.48 |
Energy contribution | -15.92 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.36 |
Mean z-score | -3.15 |
Structure conservation index | 0.43 |
SVM decision value | 4.14 |
SVM RNA-class probability | 0.999813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3797332 100 - 20766785 UCCUGCUGCAGUUGCAUCUGCAGUUCCUGUUGCAAUUGCUGUGCACGC------AGUUGCAGUUGAAUGAGUGGUAAGCUCCAGCUGACAAUGCGCCAAAAGCCAG ...(((.(((((((((...((((...)))))))))))))...)))(((------(.(((((((((...((((.....)))))))))).)))))))........... ( -34.20) >DroSec_CAF1 53873 94 - 1 U------GCAGCUGCAUCUGCAGUUCCUGCUGCAAUUGCAGUGCACGC------AGUUGCAGUUGAAUGAGUGGUAAGCUCCAGCUGACAAUGCGCCAAAAGCCAC (------(((.(((((..((((((....))))))..)))))))))(((------(.(((((((((...((((.....)))))))))).)))))))........... ( -38.70) >DroSim_CAF1 67394 94 - 1 U------GCAGCUGCAUCUGCAGUUCCUGUUGCAAUUGCAGUGCACGC------AGUUGCAGUUGAAUGAGUGGUAAGCUUCAGCUGACAAUGCGCCAAAAGCCAG (------(((.(((((..(((((......)))))..)))))))))(((------(.((((((((((...(((.....)))))))))).)))))))........... ( -33.50) >DroEre_CAF1 55221 94 - 1 U------------GCAGCUGCAGUUUCUGCUGCAACUGCAGUAAGCGCAGUUGCAGUUGCAGUUGAGUGAGUGGUUAGCUCCAGCUGACAAUGCGCCAAAAGCCAG .------------.((((((((......(((((((((((.......))))))))))))))))))).(((....((((((....))))))....))).......... ( -40.20) >DroWil_CAF1 85052 91 - 1 U------GCAACAGCAUCAGCAGUUGCGAUUGCAAUUC---------CAAUUGCAAUUGCACUUGCAUGAAUGAUAAGCCUUGUGCAAUGUUGCAACAAAAGAUGG (------((((((......(((((((((((((......---------)))))))))))))..(((((..(..........)..))))))))))))........... ( -32.20) >consensus U______GCAGCUGCAUCUGCAGUUCCUGUUGCAAUUGCAGUGCACGC______AGUUGCAGUUGAAUGAGUGGUAAGCUCCAGCUGACAAUGCGCCAAAAGCCAG .......((....(((..((((((....))))))..)))................((((((((((...((((.....)))))))))).))))))............ (-15.48 = -15.92 + 0.44)
Location | 3,797,363 – 3,797,469 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.60 |
Mean single sequence MFE | -38.12 |
Consensus MFE | -19.95 |
Energy contribution | -22.89 |
Covariance contribution | 2.94 |
Combinations/Pair | 1.10 |
Mean z-score | -3.10 |
Structure conservation index | 0.52 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3797363 106 - 20766785 CUGAGAGCAUAUUUGAUGCCAGUGCAGUAGUUGCAGUUCCUGCUGCAGUUGCAUCUGCAGUUCCUGUUGCAAUUGCUGUGCACGC------AGUUGCAGUUGAAUGAGUGGU ......((.((((..((....(..((((((((((((.....(((((((......))))))).....))))))))))))..)..((------....)).))..)))).))... ( -39.50) >DroSec_CAF1 53904 100 - 1 CUGAGAGCAUAUUUGAUUCCAGUGCAGUAGUUGCAGUU------GCAGCUGCAUCUGCAGUUCCUGCUGCAAUUGCAGUGCACGC------AGUUGCAGUUGAAUGAGUGGU ......((.((((..(((...((((((((((((((((.------(.((((((....)))))).).)))))))))))..)))))((------....)))))..)))).))... ( -38.40) >DroSim_CAF1 67425 100 - 1 CUGAGAGCAUAUUUGAUGCCAGUGCAGUAGUUGCAGUU------GCAGCUGCAUCUGCAGUUCCUGUUGCAAUUGCAGUGCACGC------AGUUGCAGUUGAAUGAGUGGU ......((.((((..((....(((((((((((((....------))))))))..((((((((.(....).)))))))))))))((------....)).))..)))).))... ( -35.20) >DroEre_CAF1 55252 92 - 1 CUGAGAGCAUAUUUGAUGCC-----UG---CUGCAGUU------------GCAGCUGCAGUUUCUGCUGCAACUGCAGUAAGCGCAGUUGCAGUUGCAGUUGAGUGAGUGGU ...((.((((.....)))))-----)(---(((((..(------------((((((((.(((..((((((....))))))))))))))))))..))))))............ ( -39.40) >consensus CUGAGAGCAUAUUUGAUGCCAGUGCAGUAGUUGCAGUU______GCAGCUGCAUCUGCAGUUCCUGCUGCAAUUGCAGUGCACGC______AGUUGCAGUUGAAUGAGUGGU ......((.((((..((....((((((((((((((((.......((((......)))).......))))))))))))))))..((..........)).))..)))).))... (-19.95 = -22.89 + 2.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:39 2006