Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,775,973 – 3,776,070 |
Length | 97 |
Max. P | 0.545169 |
Location | 3,775,973 – 3,776,070 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -19.97 |
Energy contribution | -19.81 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.60 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3775973 97 - 20766785 CACCUGGCCAAGCGGAGUCUAAUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCCACA ....((((..((.(((...........((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.20) >DroSec_CAF1 31915 97 - 1 CAUCUGGCCAAGAGGACUCUAAUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA ....((((..((.((((((.....)))((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.30) >DroSim_CAF1 54085 97 - 1 CAUCUGGCCAAGAGGACUCUAUUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA ....((((..((.((((((.....)))((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.30) >DroEre_CAF1 33326 106 - 1 CACCUGGCCAAGCGCAGCUUAACCGAGGGGCGACGCUCACUGACCACCAUAUCGGGCCUGGAGAAAGGUCAAAACAGCGCAGUCCAAAGCUCAAGUCCCUGGUCCA .....((((((((...)))).....((((((...(((.((((............(((((......))))).........))))....)))....)))))))))).. ( -28.10) >DroYak_CAF1 26402 106 - 1 CACCUGGCCAAUCGAAGUUUAAUCGAGGGGCGACGCUCACUGACCACCAUAUCGGGCCUGGAGAAAGGUCCAAACAGCGCUGUCCAAAACUCAAAUCCCUGGUACA .(((.((....((((.......)))).(((((.((((....((........))((((((......))))))....)))).)))))............)).)))... ( -29.00) >consensus CACCUGGCCAAGCGGAGUCUAAUUGAGGGGCGGCGCUG_________GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA ...........................((((.((((((................(((((......)))))....)))))).)))).....(((......))).... (-19.97 = -19.81 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006