Locus 792

Sequence ID 2R_DroMel_CAF1
Location 3,770,187 – 3,770,278
Length 91
Max. P 0.698406
window1389

overview

Window 9

Location 3,770,187 – 3,770,278
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 74.39
Mean single sequence MFE -36.25
Consensus MFE -12.31
Energy contribution -13.31
Covariance contribution 1.00
Combinations/Pair 1.30
Mean z-score -2.23
Structure conservation index 0.34
SVM decision value 0.35
SVM RNA-class probability 0.698406
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3770187 91 + 20766785
AAUGGCGGCUAUCCGGGAUGUUGGGUGCUCCUGCAG---------GACCUGCUGGCUCCAGUUGCAGU--CGUAAUGCA-GCCUAAACAU-UGCGUUUAGUUCU
......(((((..((.((((((.((.(((...((((---------...)))).))).)).((((((..--.....))))-))...)))))-).))..))))).. ( -30.30)
>DroVir_CAF1 27728 81 + 1
AAUGGCGUCGA-------UGAUGGGGGCAUCUCUGCGA----------CUGCGGG----CGCUGCAGU--CGUAAUACGCGCCUAAACAUUGCCAUUUAGUUUU
((((((...((-------((.((((.((.....(((((----------((((((.----..)))))))--))))....)).))))..))))))))))....... ( -31.80)
>DroSec_CAF1 26164 100 + 1
AAUGGCGGCUGUCCGGGAUGCUGGCUGCUCCUGCAGGACCUGCAGGACCUGCUGGCUCCAGUUGCAGU--CGUAAUGCA-GCCUAAACAU-UGCGUUUAGUUCU
....((((((((...(((.((..((.(.((((((((...)))))))).).))..)))))....)))))--)))......-..((((((..-...)))))).... ( -43.40)
>DroSim_CAF1 48234 100 + 1
AAUGGCGGCUGUCCGGGAUGCUGGCUGCUCCUGCAGGACCUGCAGGACCUGCUGGCUCCAGUUGCAGU--CGUAAUGCA-GCCUAAACAU-UGCGUUUAGUUCU
....((((((((...(((.((..((.(.((((((((...)))))))).).))..)))))....)))))--)))......-..((((((..-...)))))).... ( -43.40)
>DroYak_CAF1 20230 100 + 1
AAUGGCGGCUGUCCGGGAUCCUGGCUGCUCCUGCACGAGCUACAGGACCUGCUGGCUCCUGUUGCAGU--CGUAAUGCA-GCCUAAACAU-UGCGUUUAGUUCU
......(((((..((.(((...((((((...(((((..((.((((((((....)).)))))).)).))--.)))..)))-))).....))-).))..))))).. ( -36.20)
>DroAna_CAF1 26139 89 + 1
AAUGGCGGCGCUGC-----UUUUGCUGCUCCUGCACUUCCUGUAGG--------GGUCCCGUUGCAGUCCCGUAAUGCA-GCCUAAACAU-GGCGUUUAGUUUU
....((((.(((((-----...((..(((((((((.....))))))--------)))..))..))))).))))......-(((.......-))).......... ( -32.40)
>consensus
AAUGGCGGCUGUCCGGGAUGCUGGCUGCUCCUGCACGACCUGCAGGACCUGCUGGCUCCAGUUGCAGU__CGUAAUGCA_GCCUAAACAU_UGCGUUUAGUUCU
...((((((((..........)))))))).(((((...............((((....)))))))))...............((((((......)))))).... (-12.31 = -13.31 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:30 2006