Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,768,942 – 3,769,104 |
Length | 162 |
Max. P | 0.842910 |
Location | 3,768,942 – 3,769,040 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.65 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -25.28 |
Energy contribution | -25.52 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.85 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3768942 98 - 20766785 CCAUCCAUACACCUGGUGGAGCUGAUACAUGCGUAUUGAUGCCAAACGCGUUCAGGCAGAGCGACAAACUUGACACCCACUUAAAGGUGUUAAGUGCU (((.(((......))))))..((((...((((((.(((....)))))))))))))....(((.....((((((((((........))))))))))))) ( -29.50) >DroSec_CAF1 24900 98 - 1 CCAUCCAUACACCUGGUGGAGCUGAUACAUGCGUAUUGAUGCCAAGCGCGUUCAGGCAGAGCGACAAACUUGACACCCACUUACAGGUGUUAAGUGCU .((((.((((.((....)).((........)))))).))))...(((((((((.....))))).)..((((((((((........))))))))))))) ( -31.20) >DroSim_CAF1 46963 98 - 1 CCAUCCAUACACCUGGUGGAGCUGAUACAUGCGUAUUGAUGCCAAGCGCGUUCAGGCAGAGCGACAAACUUGACACCCACUUACAGGUGUUAAGUGCU .((((.((((.((....)).((........)))))).))))...(((((((((.....))))).)..((((((((((........))))))))))))) ( -31.20) >DroEre_CAF1 26050 94 - 1 CCAUCC----ACCUGAUGGAGCUGAUAUUUGCGUAUUGAUGCCAAGCGCGUUCGGGCAGAGCGGCAAACUUGACACCCACUCAAAAGUGUUAAGUGGC (((((.----....))))).((........))........(((..((.(((((.....)))))))..(((((((((..........)))))))))))) ( -29.00) >DroYak_CAF1 18928 94 - 1 CCAUCC----AUCUAGUGGAGCCGAUACAUGCGUAUUGAUGCCAAACGCGUUCAGGCGAAGCGCCAAACUUGACACCCACUCAAAAGUGUUAAGUGGU ...(((----((...)))))(((((...((((((.(((....))))))))))).((((...))))..(((((((((..........)))))))))))) ( -27.20) >consensus CCAUCCAUACACCUGGUGGAGCUGAUACAUGCGUAUUGAUGCCAAGCGCGUUCAGGCAGAGCGACAAACUUGACACCCACUUAAAGGUGUUAAGUGCU (((((.........))))).(((.....((((((.(((....)))))))))...)))..........((((((((((........))))))))))... (-25.28 = -25.52 + 0.24)
Location | 3,769,012 – 3,769,104 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -18.04 |
Energy contribution | -18.57 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.24 |
Mean z-score | -1.95 |
Structure conservation index | 0.58 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3769012 92 - 20766785 ---ACAUAGAGCUCCAGCCAGGCGUUCC-AUUCGCAUGCAUGAUUGAC-AGCCGAGUGGGCGGCCACAUCCAUCCAUACACCUGGUGGAGCUGAUAC ---......(((((((.(((((.(((((-(((((..((((....)).)-)..)))))))).((......))......)).))))))))))))..... ( -35.00) >DroSec_CAF1 24970 92 - 1 ---ACAUAGAGCUCCAUCCAGGCGUUCC-AUUCGCAUGCAUGAUUGAC-AGCCGAGUGGUGGGGCACAUCCAUCCAUACACCUGGUGGAGCUGAUAC ---......(((((((.(((((.((.((-(((((..((((....)).)-)..)))))))((((.....)))).....)).))))))))))))..... ( -36.10) >DroSim_CAF1 47033 91 - 1 ---ACAUAGAGCUCCAGCCAGGCGUUCC-AUUCGCAUGCAUGAUUGAC-AGCCGAGUGG-GGGGCACAUCCAUCCAUACACCUGGUGGAGCUGAUAC ---......(((((((.(((((.((.((-(((((..((((....)).)-)..)))))))-(((.....)))......)).))))))))))))..... ( -36.10) >DroEre_CAF1 26120 88 - 1 ---ACAUAGAGCUCCAGCCAGGCGUUCC-AUUCGCAUGCAUGACAGCCGAGCCGAGUGG-AGGCCUCAUCCAUCC----ACCUGAUGGAGCUGAUAU ---...........((((.((((.((((-((((((..((......))...).)))))))-))))))..((((((.----....)))))))))).... ( -31.50) >DroYak_CAF1 18998 79 - 1 ---ACAUAGAGCUCCAGCCAGGCGUUCC-AUUCGCA----UGACAGC-----CGAGUGG-AGGGCAUAUCCAUCC----AUCUAGUGGAGCCGAUAC ---.....(.((((((.....((.((((-((((((.----.....).-----)))))))-)).)).........(----.....))))))))..... ( -24.40) >DroAna_CAF1 23543 78 - 1 GACACAUAGAGCUUCAACGAGGCGUUCCGAAUCGCUUGCAUGAUUGAC-AGCCGAGUGG-UGGGCACAUCC-----------UUGUGGCGU------ ..((((..(((((((...)))))((.((..((((((((..((.....)-)..)))))))-).)).)).)).-----------.))))....------ ( -22.90) >consensus ___ACAUAGAGCUCCAGCCAGGCGUUCC_AUUCGCAUGCAUGAUUGAC_AGCCGAGUGG_AGGGCACAUCCAUCC____ACCUGGUGGAGCUGAUAC .........(((((((.(((((((........)))....................(((......)))..............)))))))))))..... (-18.04 = -18.57 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:29 2006