Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,763,460 – 3,763,567 |
Length | 107 |
Max. P | 0.684821 |
Location | 3,763,460 – 3,763,567 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 73.27 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -14.72 |
Energy contribution | -16.20 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.38 |
Mean z-score | -1.76 |
Structure conservation index | 0.50 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3763460 107 - 20766785 CUAGGUUAAUAAGACAACGUAUAGAUGACGCUUUAGUGCAGUCUAUGCAACGAGUGUAGAAGGCAAGUACUGUCCGUGAUAGAUAGAUGGCGCUAUCAGAACGGUAA ....(((.....)))..(((...((((.((((....(((..(((((((.....)))))))..)))....(((((.......)))))..)))).))))...))).... ( -25.40) >DroSec_CAF1 20025 107 - 1 CUAGGUUAAUAAGACAACGUGUAGGUGGCGCCUUUGAGCCGCGUAUACAACGAAUGUAGGCGCCAAGUACUGUCCCUGAUAGAUAGAUGGCGCUAUCUUGACGGUAA .........(((((....(((((.(((((........))))).)))))..........(((((((..(((((((...))))).))..))))))).)))))....... ( -34.80) >DroSim_CAF1 14340 107 - 1 CUAGGUUAAUAAAACAACGUAUAGGUGGCGCCUUCGAGCCGUGUAUACAACGAAUGUAGACGGCAAGUACUGUCACUGAUAGAUAGAUGGCGCUAUCAUGACGGUAA .................(((...(((((((((.((..(((((.((((.......)))).))))).....(((((...)))))...)).)))))))))...))).... ( -36.20) >DroEre_CAF1 20277 91 - 1 AUAGCUUAUAAAAACGAUGUAUAGGUGGCGCC-AUGUGCCAUGUGGAAAACGA-----------AAGUACUGUCGCUGAUA----GAGGGCGCCAGCAAAACAGUAA .................(((...(.(((((((-.(.((.((.((((...((..-----------..))....)))))).))----.).))))))).)...))).... ( -24.90) >DroYak_CAF1 13406 92 - 1 CUAGCUUAAAGAGACGGCGUAUAGGUGGCGCCCUUGUGCCGUGUAUAUAACGA-----------AACUACUAUCGCUGAUA----GAGGGCGCUGGCAAAACUGUAA (((((.........((..(((((..((((((....))))))..)))))..)).-----------..((.(((((...))))----).))..)))))........... ( -25.40) >consensus CUAGGUUAAUAAGACAACGUAUAGGUGGCGCCUUUGUGCCGUGUAUACAACGA_UGUAG__G_CAAGUACUGUCCCUGAUAGAUAGAUGGCGCUAUCAAAACGGUAA ..................(((((.(((((((....))))))).)))))...................((((((...((((((..........))))))..)))))). (-14.72 = -16.20 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:27 2006