Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,331,628 – 1,331,748 |
Length | 120 |
Max. P | 0.584731 |
Location | 1,331,628 – 1,331,748 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -42.60 |
Consensus MFE | -29.69 |
Energy contribution | -31.50 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.70 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1331628 120 + 20766785 CCGGGUAGCGGUUGCUGGCCAGGCCAAAAGUUUCGCCUGCCGCAAAUCUGGCUCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGGCAAAGUGCGGGCAUCAA ..((.((((....)))).))..(((....(((((((((((...((((..(((((...))))).)))))))))).)))))((((...(.(..((....))..).)...)))).)))..... ( -45.80) >DroSec_CAF1 50159 120 + 1 CCGGGUGGCGGUUGCUGGCCAGGUCAAAAGUUUCGCCUGCCGCAAAUCUGGCUCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGGCAAAGUGCGGCCAUCAA ...((((((.((.(((..((((((.....(((((((((((...((((..(((((...))))).)))))))))).)))))..))))))(((.(.......).)))..))))).)))))).. ( -46.80) >DroEre_CAF1 31811 99 + 1 ----------------G-----GCCAAAAGUUUCGCCAGCCGCAAAUCUGGCCCGUACAGCUCAUUUGCAGGCCCAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGACAUCAA ----------------(-----(((....((...(((((........)))))....)).((......)).))))....(((((...(((..((....))..)))...)))))........ ( -35.00) >DroYak_CAF1 17121 115 + 1 CCAGGUAGCGGCUGCCG-----GCCAAAAGUUUCGUCUGCCGCAAAUCUGGCCCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGGCAUCAA ...(((((...))))).-----(((....((((((...(((((((((..(((.......))).)))))).)))))))))((((...(((..((....))..)))...)))).)))..... ( -42.80) >consensus CCGGGUAGCGGUUGCUG_____GCCAAAAGUUUCGCCUGCCGCAAAUCUGGCCCGUAGAGCUCAUUUGCAGGCUGAAACGCACCUGGGCUGAUUUAUGUUGGCCAAAGUGCGGGCAUCAA ......................(((....((((((...(((((((((..(((((...))))).)))))).)))))))))((((...(((..((....))..)))...)))).)))..... (-29.69 = -31.50 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:06 2006