Locus 787

Sequence ID 2R_DroMel_CAF1
Location 3,753,149 – 3,753,239
Length 90
Max. P 0.530471
window1381

overview

Window 1

Location 3,753,149 – 3,753,239
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.89
Mean single sequence MFE -26.70
Consensus MFE -17.82
Energy contribution -17.77
Covariance contribution -0.05
Combinations/Pair 1.08
Mean z-score -1.18
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.530471
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3753149 90 + 20766785
UGCGUGUGUGU---GU--CU-------------------GUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAA------
(((((((..((---(.--((-------------------((......((((((...)))))))))))))...)).....(((((((.....)))))))..........))))).------ ( -24.80)
>DroSec_CAF1 9855 95 + 1
UGUGCGCGUGU---GU--GUG------UC--------GAGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAA------
.....((((((---((--(((------((--------((((.(((......))))).)))))))).)))..........(((((((.....)))))))..........))))..------ ( -26.60)
>DroWil_CAF1 11547 95 + 1
UGAGUUUGUAU---GU--GUG------UA-------CAUGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUUGAAGCAAUU-GCUUUAGCGAUCAAUGAACGCAA------
((((((.....---((--((.------((-------((....)))).((((((...))))))...))))..))))))...((((((....-))))))(((.((...)).)))..------ ( -25.20)
>DroYak_CAF1 3270 85 + 1
UGUGUGU---------------------C--------GAGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAA------
..((.((---------------------.--------.(((.(((..((((((...)))))))))..)))..)).))...((((((.....))))))(((.((...)).)))..------ ( -22.60)
>DroAna_CAF1 9642 113 + 1
UGUGUGUGUGGCAGCUAUGUCUAUAUGCC-UUUAUGGGUGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAA------
(((((((((.((.........((((((((-(....)))))))))...((((((...)))))))).))))..........(((((((.....)))))))..........))))).------ ( -32.40)
>DroPer_CAF1 8589 111 + 1
UGUGUGCGUGC---CUCUCUC------UCGCUCUUGUCUGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCCAUUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAGAGUGCU
(((.(((((((---..(....------........)...))))))).((((((...)))))))))((((((.........((((((.....))))))(((.((...)).))).)))))). ( -28.60)
>consensus
UGUGUGUGUGU___GU__GU_______UC________GUGUAUGUAAGUCAACAACGUUGACGCAGCACUUAACUCAACUCGAAGCAAUUGGCUUUGGCGAUCAAUGAACGCAA______
(((((.....................................(((......))).(((((((((((.......)).....((((((.....))))))))).)))))).)))))....... (-17.82 = -17.77 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:23 2006