Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,748,938 – 3,749,054 |
Length | 116 |
Max. P | 0.530753 |
Location | 3,748,938 – 3,749,054 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -32.51 |
Consensus MFE | -19.86 |
Energy contribution | -20.30 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.61 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3748938 116 + 20766785 ----UGUGAGAGAGAAGCGAAAGUCGAGUUCUCAGCGUCACAAUAACAACACCCACGCGACAGAAGCAUCUUUAGUUCUCAGCGAGAGAGAUAAGCUCAGCUUCCUCUUCUUCUUUCUCU ----...((((((((((.((..(((((....)).((((................))))))).(((((..(((...(((((.....)))))..)))....))))).))..)))))))))). ( -31.69) >DroSim_CAF1 12915 116 + 1 ----UGUGAGAGAGAAGCGAAAGUCGCGUUCUCAGCGUCACAAUAACAACACCCACGCGACAGAAGCAUCUUUAGUUCUCAGCGAGAGAGAUAAGCUCAGCUUCCUCUUCUUCUUUCUCU ----...((((((((((.((..(((((((.......((.......)).......))))))).(((((..(((...(((((.....)))))..)))....))))).))..)))))))))). ( -34.64) >DroYak_CAF1 11503 103 + 1 AGAGUCUGAGAGAGAUGCGAAAGUCGCGUUCUCAGCGUCACAAUAACAACACCCUCUCGAAAGAAGCAUCUUUAGUUCUCGGCGAGAGAAAUAAGCUCAGCUU----------------- .(((.(((((((((((((....((.((((.....)))).))...............((....)).))))))))..(((((.....))))).....))))))))----------------- ( -31.20) >consensus ____UGUGAGAGAGAAGCGAAAGUCGCGUUCUCAGCGUCACAAUAACAACACCCACGCGACAGAAGCAUCUUUAGUUCUCAGCGAGAGAGAUAAGCUCAGCUUCCUCUUCUUCUUUCUCU ......((((((....((....))....))))))(((..................)))....(((((..(((...(((((.....)))))..)))....)))))................ (-19.86 = -20.30 + 0.45)
Location | 3,748,938 – 3,749,054 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -36.57 |
Consensus MFE | -22.47 |
Energy contribution | -24.47 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.61 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3748938 116 - 20766785 AGAGAAAGAAGAAGAGGAAGCUGAGCUUAUCUCUCUCGCUGAGAACUAAAGAUGCUUCUGUCGCGUGGGUGUUGUUAUUGUGACGCUGAGAACUCGACUUUCGCUUCUCUCUCACA---- .((((.(((((..((((((((....(((...((((.....))))....)))..))))))((((.((.(((((..(....)..)))))....)).)))).))..))))).))))...---- ( -36.60) >DroSim_CAF1 12915 116 - 1 AGAGAAAGAAGAAGAGGAAGCUGAGCUUAUCUCUCUCGCUGAGAACUAAAGAUGCUUCUGUCGCGUGGGUGUUGUUAUUGUGACGCUGAGAACGCGACUUUCGCUUCUCUCUCACA---- .((((.(((((..((((((((....(((...((((.....))))....)))..))))))(((((((.(((((..(....)..)))))....))))))).))..))))).))))...---- ( -42.40) >DroYak_CAF1 11503 103 - 1 -----------------AAGCUGAGCUUAUUUCUCUCGCCGAGAACUAAAGAUGCUUCUUUCGAGAGGGUGUUGUUAUUGUGACGCUGAGAACGCGACUUUCGCAUCUCUCUCAGACUCU -----------------.(((((((.......((((((..((((((.......).))))).))))))(((((..(....)..)))))((((..(((.....))).)))).))))).)).. ( -30.70) >consensus AGAGAAAGAAGAAGAGGAAGCUGAGCUUAUCUCUCUCGCUGAGAACUAAAGAUGCUUCUGUCGCGUGGGUGUUGUUAUUGUGACGCUGAGAACGCGACUUUCGCUUCUCUCUCACA____ ...............((((((....(((...((((.....))))....)))..)))))).....((((((((..(....)..)))))(((((.(((.....))))))))...)))..... (-22.47 = -24.47 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:22 2006