Locus 780

Sequence ID 2R_DroMel_CAF1
Location 3,743,090 – 3,743,209
Length 119
Max. P 0.707378
window1366

overview

Window 6

Location 3,743,090 – 3,743,209
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.99
Mean single sequence MFE -23.51
Consensus MFE -22.47
Energy contribution -22.80
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.96
SVM decision value 0.37
SVM RNA-class probability 0.707378
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3743090 119 - 20766785
AACUGAAAAAAAA-AACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA
...(((.......-(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......)))))......))). ( -23.62)
>DroSim_CAF1 5776 120 - 1
AACUGAAAAAAAACAACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA
..............(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......))))).......... ( -23.50)
>DroYak_CAF1 5700 116 - 1
AACUAAAAAA----AACACAAGGCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACGAGAGCGCCGACGAGCAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA
..........----(((((..(((....(((((...(((.((((((......)))))).))).......))))))))(((.....))).(((....)))......))))).......... ( -23.40)
>consensus
AACUGAAAAAAAA_AACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA
..............(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......))))).......... (-22.47 = -22.80 +   0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:09 2006