Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,743,090 – 3,743,209 |
Length | 119 |
Max. P | 0.707378 |
Location | 3,743,090 – 3,743,209 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -23.51 |
Consensus MFE | -22.47 |
Energy contribution | -22.80 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.96 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3743090 119 - 20766785 AACUGAAAAAAAA-AACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA ...(((.......-(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......)))))......))). ( -23.62) >DroSim_CAF1 5776 120 - 1 AACUGAAAAAAAACAACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA ..............(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......))))).......... ( -23.50) >DroYak_CAF1 5700 116 - 1 AACUAAAAAA----AACACAAGGCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACGAGAGCGCCGACGAGCAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA ..........----(((((..(((....(((((...(((.((((((......)))))).))).......))))))))(((.....))).(((....)))......))))).......... ( -23.40) >consensus AACUGAAAAAAAA_AACACAAACCAAGGGCUCUAAUUGAGUAUUAAAUUUUAUUGAUGAUCAUUACACUAGAGCGCCGACGAGGAGUCAGUCAAGAGACCAAAAAGUGUUAACAAGUCGA ..............(((((.......((((((((..(((.((((((......)))))).)))......)))))).))(((.....))).(((....)))......))))).......... (-22.47 = -22.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:09 2006