Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,741,191 – 3,741,425 |
Length | 234 |
Max. P | 0.645964 |
Location | 3,741,191 – 3,741,305 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -31.75 |
Energy contribution | -32.75 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.80 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3741191 114 - 20766785 CCUGGACGAGCCCUCGUCCAAGAAAUUCCUAGCUGGCGCCAUCGAAAAGUCGAGCUCCGCUUGGAGGCCGUGGUAGAUCAAC------CGCACAGGCCACUUCUAUGUUACGUUUAUACA ..(((((((....)))))))((((..(((.(((.((.((..((((....)))))).))))).)))(((((((((......))------)))...))))..))))................ ( -40.20) >DroSim_CAF1 3883 114 - 1 CCUGGACGAACCCUCGUCCAAGAAAUUCCUAGCAGGCGCCAUCGAAAAGUCGAGCUCCGCUUGGAGGCCGUGGUAGAUCAAC------UGCAUAGGCCACUGCUAUGUUACGUUUAUACA ..(((((((....))))))).........(((((((((...((((....))))....))).....((((...((((.....)------)))...)))).))))))............... ( -38.30) >DroYak_CAF1 3801 120 - 1 CUUGGACGAACCCUCGUCCAAGAAAUUCCUAGCAGGCGCCAUCGAAAAGUCAAGCUCCGCUUGGAGGCCGUGGUAGAUCAUCUGCAUCUGCAUAGGCCACUUCUACGUUACGUUUAUACA (((((((((....)))))))))....(((.(((.((.((...(.....)....)).))))).)))((((...(((((((....).))))))...))))...................... ( -40.30) >consensus CCUGGACGAACCCUCGUCCAAGAAAUUCCUAGCAGGCGCCAUCGAAAAGUCGAGCUCCGCUUGGAGGCCGUGGUAGAUCAAC______UGCAUAGGCCACUUCUAUGUUACGUUUAUACA ..(((((((....)))))))((((..(((.(((.((.((..((((....)))))).))))).)))((((...(((.............)))...))))..))))................ (-31.75 = -32.75 + 1.00)
Location | 3,741,305 – 3,741,425 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -57.20 |
Consensus MFE | -53.92 |
Energy contribution | -53.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.51 |
Structure conservation index | 0.94 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3741305 120 + 20766785 GAGCAGUCGCUGGACUCGGCCUCCGCCUCCCUGUCGCGCUUGGCGAUUCCGCUGGUGGAGCUCACUUGCUGUUGCUGCAAGUGGGCCAGCGGUCGCGAGCAUCCGCUGCUGUCGUGGCUU .......((((((.......(((((((.....(((((.....)))))......)))))))(((((((((.......)))))))))))))))((((((((((.....)))..))))))).. ( -54.20) >DroSim_CAF1 3997 120 + 1 GAGCAGUCGCUGGACUCGGCCUCCGCCUCCCUGUCGCGCUUGGCGAUUCCGCUGGUGGAGCUCACUUGCUGUUGCUGCAAGUGGGCCAGCGGUCGCGAGCAUCCGCUGCUGUCGUGGCUG ...(((((((..(((..((((((((((.....(((((.....)))))......))))))...(((((((.......)))))))))))(((((.(....)...)))))...)))))))))) ( -54.90) >DroYak_CAF1 3921 120 + 1 GAGCAGUCGCUGGACUCGGCCUCCGCCUCCCUGUCGCGCUUGGCGAUUCCGCUGGUGGAGGUCACUUGCUGUUGCUGCAAGUGGGCCAGCGAUCGCGAGCAUCCGCUGCUGUCGUGGCUU ((((.((((((((.(((((((((((((.....(((((.....)))))......))))))))))((((((.......)))))))))))))))))((((((((.....)))..))))))))) ( -62.50) >consensus GAGCAGUCGCUGGACUCGGCCUCCGCCUCCCUGUCGCGCUUGGCGAUUCCGCUGGUGGAGCUCACUUGCUGUUGCUGCAAGUGGGCCAGCGGUCGCGAGCAUCCGCUGCUGUCGUGGCUU ..((..(((((((.(((((.(((((((.....(((((.....)))))......))))))).))((((((.......))))))))))))))))..))........((..(....)..)).. (-53.92 = -53.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:06 2006