Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,736,258 – 3,736,378 |
Length | 120 |
Max. P | 0.938289 |
Location | 3,736,258 – 3,736,378 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.50 |
Mean single sequence MFE | -45.11 |
Consensus MFE | -27.50 |
Energy contribution | -27.95 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.31 |
Mean z-score | -2.25 |
Structure conservation index | 0.61 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3736258 120 + 20766785 ACCGCACUUUUGUGACAACACCAAGGUACCGACCAGGGAUCCCUGCACGUUAAUGAUAUGCCAGAAUGCGGGAACCUGUCACAUUAUCAAGGGCGUAGCACUCUGCAAUUGCACGGACCA ..(((.((((((((((........(((....))).(((.((((.(((......((......))...))))))).))))))))).....))))))).....((.(((....))).)).... ( -30.90) >DroPse_CAF1 13291 120 + 1 GCCGCAAUUCUGCGAGGCAUCGCAGGUGCCCGUCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA ((((...((((((((....)))).(((((((((((((....)))).))))))))).......))))...)))).((.((((((((......))))))))...((((....)))))).... ( -57.20) >DroGri_CAF1 14152 120 + 1 ACCACGCUUCUGUGAUGUCUCUCAGCUGCCGUCGCGCAAUCCCUGCACGGGCAUCAUUUGCCAGAACUCGGGCACCUGCCACGUAAUCAAGGGCGUUGCCAUGUGCAACUGCACAGAUCA ...(((((..((..((((....(((.((((..((.(((.....))).))((((.....))))........)))).)))..))))...))..))))).....(((((....)))))..... ( -38.60) >DroWil_CAF1 14958 120 + 1 GCCACGUUUCUGUGAUGCCUCCGAGGUGCCAUCGCGUAAUCCCUGCACUGGCAUCAUAUGCCAGAAUAGUGGCACUUGUCACGUCAUCAAGGGCGUGGCUAUGUGCAAUUGUACAGAUCA ((((((((..(((((((......(((((((((.(((.......))).(((((((...)))))))....)))))))))....))))).))..))))))))..(((((....)))))..... ( -49.20) >DroAna_CAF1 13327 120 + 1 ACCGCACUUCUGCGACUCCGCCAAGGUGCCCCUGCGAGAUCCCUGCACCGGAAUCAUCUGCCAAAACUCUGGAACCUGUCACGUCAUCAAAGGUGUGGCGUUGUGCAACUGCACGGAUCA ...((((((..(((....)))..))))))........(((((.(((((((((...............))))).....(((((..(......)..)))))..........)))).))))). ( -37.56) >DroPer_CAF1 13010 120 + 1 GCCGCAAUUCUGCGAGGCAUCGCAGGUGCCCGUCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA ((((...((((((((....)))).(((((((((((((....)))).))))))))).......))))...)))).((.((((((((......))))))))...((((....)))))).... ( -57.20) >consensus ACCGCACUUCUGCGACGCCUCCCAGGUGCCCGCCAGGAAUCCCUGCACGGGCAUCAUUUGCCAGAACGCCGGCACCUGUCACGUCAUCAAGGGCGUGGCCAUGUGCAACUGCACGGAUCA ..((((....)))).........(((((((.....(......)......((((.....))))........)))))))((((((((......))))))))..(((((....)))))..... (-27.50 = -27.95 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006