Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,727,857 – 3,727,964 |
Length | 107 |
Max. P | 0.828784 |
Location | 3,727,857 – 3,727,964 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 75.65 |
Mean single sequence MFE | -35.15 |
Consensus MFE | -22.08 |
Energy contribution | -23.78 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.38 |
Mean z-score | -1.55 |
Structure conservation index | 0.63 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3727857 107 + 20766785 U-------ACAUUCU--UUUAUAGAGAGCAUUCAAAGCAUGAAGAUGUUUUAUGCGGACGCCCAGACCGGCUCAAACACCUGUGCCGAGUGGGCUUAUCGCGGUGGCUGCCAGCAG .-------....(((--(.....))))((....(((((((....)))))))..((((..(((((...((((.((......)).))))..)))))...))))(((....))).)).. ( -31.80) >DroVir_CAF1 6019 106 + 1 U-------AUUUUGAAAUUUGUAGAAAGCAUUCAGAGCAUGAAAAUGUUCUAUGCAGAUGCCCAAACGGGAACCAACUCCUGCGCUGG---UCCCAUGCGUGGCGGCUGCGAGCAG .-------...................((....(((((((....))))))).(((((.((((.....((((......))))((((((.---...)).)))))))).))))).)).. ( -33.80) >DroPse_CAF1 5234 109 + 1 UCGUGACUGUUUU----CUUCCAGAGAGCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAGACGGGCACCAACACCUGUGCCGG---ACCCCUGCGCGGUGGCUGUGAGCAU ....((.((((((----(.....))))))).))(((((((....)))))))((((((.(((((....)))))))..((((.((((.((---...)).)))))))).......)))) ( -44.40) >DroMoj_CAF1 6592 106 + 1 U-------UCUUUUUAAUAUACAGAGAGUAUUCAGAGCAUGAAAAUGUUCUACGCUGAUGCUCAAACGGGCACCAAUACCUGUGCUGG---GCCCCUGCGCGGUGGCUGCGAGCAG .-------.............(((...((....(((((((....))))))))).))).(((((....((((.(((.((....)).)))---))))....((((...))))))))). ( -33.40) >DroAna_CAF1 5323 98 + 1 U-------ACUU--------UCAGAGACCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAAACUGGCACUAAUUCGUGCGCAGG---ACCACUACGUGGUGGAUGCGAACAU .-------....--------...(((.((.(..(((((((....)))))))..).)).((((......))))....)))((.((((..---.(((((....))))).)))).)).. ( -28.70) >DroPer_CAF1 4958 102 + 1 U-------AUUUU----CUUCCAGAGAGCAUUCAGAGCAUGAAGAUGUUCUAUGCGGAUGCCCAGACGGGCACCAACACCUGUGCCGG---ACCCCUGCGCGGUGGCUGUGAGCAU .-------.....----((..(((...((((..(((((((....)))))))))))((.(((((....)))))))..((((.((((.((---...)).)))))))).)))..))... ( -38.80) >consensus U_______ACUUU____UUUACAGAGAGCAUUCAGAGCAUGAAAAUGUUCUAUGCGGAUGCCCAAACGGGCACCAACACCUGUGCCGG___ACCCCUGCGCGGUGGCUGCGAGCAG ...........................((....(((((((....))))))).(((((.(((((....)))))....((((.((((.((......)).)))))))).))))).)).. (-22.08 = -23.78 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:49 2006