Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,330,414 – 1,330,567 |
Length | 153 |
Max. P | 0.902480 |
Location | 1,330,414 – 1,330,534 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -30.57 |
Energy contribution | -32.81 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.14 |
Mean z-score | -2.16 |
Structure conservation index | 0.76 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1330414 120 + 20766785 GAAUGCAAAUGGGGGCUCGAGCCCGGCAUGCGUUAUCCAUCGCCGUGCAAUUGAAUUAUUGCAUGCCGCGGCUAAUUCCGCAUGUUUGCUCGUCCUGUAAUUAGCCGAGCGCGCAUUAAU .(((((......((((....))))((((((((..((...((((((((((((......))))))))..))))...))..)))))))).(((((..(((....))).)))))..)))))... ( -45.60) >DroSec_CAF1 48939 120 + 1 GAAUGCAAAUGGGCGACCGAGCCCGGCAUGCGUUAUCCAUCGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGUUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAU ...(((....((((......))))((((((((..((...((((((((((((......))))))))..))))...))..)))))))).(((((..(((....))).))))))))....... ( -44.90) >DroEre_CAF1 29942 119 + 1 GAAUGCAAAUGUGAGCCCGGGUCCGGCGUGCGUU-UCCAUCGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAU .......((((((.((.(((....((((((((..-....((((((((((((......))))))))..)))).......))))))))(((.......))).....))).)).))))))... ( -40.12) >DroYak_CAF1 15918 101 + 1 GAAUGCAAAUGUGGGCCCGAGUCCGGCAUGCGUUAUCCAUCGCAGUGCAAUUGAAUUAUUGCA-------------------UGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAU .......((((((.((.(((((..(((.((((........))))(((((((......))))))-------------------)))).)))))..(((....)))....)).))))))... ( -30.20) >consensus GAAUGCAAAUGGGGGCCCGAGCCCGGCAUGCGUUAUCCAUCGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAU ...(((......((((....))))((((((((.......((((((((((((......))))))))..)))).......)))))))).(((((..(((....))).))))))))....... (-30.57 = -32.81 + 2.25)
Location | 1,330,414 – 1,330,534 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.53 |
Mean single sequence MFE | -39.62 |
Consensus MFE | -27.21 |
Energy contribution | -30.03 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.08 |
Mean z-score | -2.16 |
Structure conservation index | 0.69 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1330414 120 - 20766785 AUUAAUGCGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGCCGCGGCAUGCAAUAAUUCAAUUGCACGGCGAUGGAUAACGCAUGCCGGGCUCGAGCCCCCAUUUGCAUUC ...(((((..(((((.((.......)).)))))......((((......))))(((((((....(((((.((((...)))))))))...)))))))((((....))))......))))). ( -43.80) >DroSec_CAF1 48939 120 - 1 AUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCGAUGGAUAACGCAUGCCGGGCUCGGUCGCCCAUUUGCAUUC ......(((((((((.((.......)).)))))...((((((..(((.(((((.(..((((((......))))))).))))).)))..))))))..((((......))))....)))).. ( -45.00) >DroEre_CAF1 29942 119 - 1 AUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAGCAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCGAUGGA-AACGCACGCCGGACCCGGGCUCACAUUUGCAUUC ...((((((.((((((...................((.(((((......))))))).((((((......))))))(((((.((..-..))..)))))...)))))).))))))....... ( -40.40) >DroYak_CAF1 15918 101 - 1 AUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAGCA-------------------UGCAAUAAUUCAAUUGCACUGCGAUGGAUAACGCAUGCCGGACUCGGGCCCACAUUUGCAUUC ...((((((.((((((((..((....))..)))..(((-------------------(((....(((((.((((...)))))))))...))))))......))))).))))))....... ( -29.30) >consensus AUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCGAUGGAUAACGCAUGCCGGACUCGGGCCCACAUUUGCAUUC ...((((((.((((((((..((....))..)))...............(((.((((((((....(((((.((((...)))))))))...))))))))))).))))).))))))....... (-27.21 = -30.03 + 2.81)
Location | 1,330,454 – 1,330,567 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -36.23 |
Consensus MFE | -29.25 |
Energy contribution | -29.50 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -1.48 |
Structure conservation index | 0.81 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1330454 113 + 20766785 CGCCGUGCAAUUGAAUUAUUGCAUGCCGCGGCUAAUUCCGCAUGUUUGCUCGUCCUGUAAUUAGCCGAGCGCGCAUUAAUUG-------AAGUGCCUGCGACUGUCAUGGGCAGUCCGAC .((.(.(((.((.(((((.(((.(((..((((((((((.(.(((......))).).).))))))))).))).))).))))).-------)).)))).))((((((.....)))))).... ( -40.10) >DroSec_CAF1 48979 113 + 1 CGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGUUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAUUG-------AAGUGCCCGCGACUGUCAUGGGCAGUCCGAC .(.((((((((......)))))))).)(((........)))......(((((..(((....))).)))))((((.((....)-------).)))).((.((((((.....)))))))).. ( -36.40) >DroEre_CAF1 29981 120 + 1 CGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAUUGCGCCUGAAAGUGCCUGCGACUGUCAUGGGCAGUCCGAC (((((((((((......))))))))..))).........(((.((..(((((..(((....))).)))))((.((.....)).))........)).)))((((((.....)))))).... ( -38.00) >DroYak_CAF1 15958 94 + 1 CGCAGUGCAAUUGAAUUAUUGCA-------------------UGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAUUG-------AAGUGCCUACGACUGUCAUGGGCAGUCCGAC .(((.((((((......))))))-------------------)))..(((((..(((....))).)))))((((.((....)-------).))))....((((((.....)))))).... ( -30.40) >consensus CGCCGUGCAAUUGAAUUAUUGCAUGCCGCGACUAAUUCCGCAUGCUUGCUCGUCCUGUAAUUAGCCGAGCGCACAUUAAUUG_______AAGUGCCUGCGACUGUCAUGGGCAGUCCGAC .((((((((((......))))))))..(((........)))..))..(((((..(((....))).)))))((((.................))))....((((((.....)))))).... (-29.25 = -29.50 + 0.25)
Location | 1,330,454 – 1,330,567 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -36.73 |
Consensus MFE | -28.66 |
Energy contribution | -29.53 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.78 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1330454 113 - 20766785 GUCGGACUGCCCAUGACAGUCGCAGGCACUU-------CAAUUAAUGCGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGCCGCGGCAUGCAAUAAUUCAAUUGCACGGCG (((((((((.......)))))....(((.((-------.(((((.((((.((((((((((((.........(((....)))..))))))))).))).)))).))))).)).))).)))). ( -38.70) >DroSec_CAF1 48979 113 - 1 GUCGGACUGCCCAUGACAGUCGCGGGCACUU-------CAAUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCG ((((...((((..((((..(((((.((((..-------........))))(((((.((.......)).))))).....))))).....)))).))))((((((......)))))))))). ( -37.20) >DroEre_CAF1 29981 120 - 1 GUCGGACUGCCCAUGACAGUCGCAGGCACUUUCAGGCGCAAUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAGCAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCG ((((...((((..((((..(((((.((........(((((.....)))))(((((.((.......)).)))))..)).))))).....)))).))))((((((......)))))))))). ( -42.40) >DroYak_CAF1 15958 94 - 1 GUCGGACUGCCCAUGACAGUCGUAGGCACUU-------CAAUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAGCA-------------------UGCAAUAAUUCAAUUGCACUGCG ....(((((.......)))))....((((..-------........))))(((((.((.......)).)))))..(((-------------------((((((......)))))).))). ( -28.60) >consensus GUCGGACUGCCCAUGACAGUCGCAGGCACUU_______CAAUUAAUGUGCGCUCGGCUAAUUACAGGACGAGCAAACAUGCGGAAUUAGUCGCGGCAUGCAAUAAUUCAAUUGCACGGCG (((((((((.......)))))((((((((.................))))(((((.((.......)).)))))..((((((.(.........).))))))..........)))).)))). (-28.66 = -29.53 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:00 2006