Locus 769

Sequence ID 2R_DroMel_CAF1
Location 3,717,886 – 3,717,990
Length 104
Max. P 0.534833
window1342

overview

Window 2

Location 3,717,886 – 3,717,990
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -17.23
Consensus MFE -15.64
Energy contribution -15.64
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.91
SVM decision value 0.00
SVM RNA-class probability 0.534833
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3717886 104 - 20766785
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCAUCACCCACCACCCACCACCCAACGAAAAAGCCCGAUGCUGUUCCAUACUCUU
............((((.((((((.........)))))).))))..((((.((((...............................)))).)))).......... ( -17.28)
>DroSec_CAF1 1116 93 - 1
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCAUCA-----------CCACCCACCGAAAAAGCCCGAUGCUGUUCCAUACUCUU
............((((.((((((.........)))))).))))..((((.((((.-----------...................)))).)))).......... ( -17.75)
>DroSim_CAF1 1116 93 - 1
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACAACAUCA-----------CCACCCACCGAAAAAGCCCGAUGCUCUUCUAUACUCUU
............((((.((((((.........)))))).))))............-----------.........(((..(((.....))).)))......... ( -15.60)
>DroEre_CAF1 1095 79 - 1
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCC------------------------ACCCACCGA-AAAGCCCGAUGCUGCUCCAUUCUCUU
............((((.(((((((.(((.......))).)))))------------------------)).((.((.-......)).))))))........... ( -18.20)
>DroYak_CAF1 1118 92 - 1
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCACCA-----------CCACCCACCGA-AAAGCCCGAUGCUGUUCCAUUCUCUU
............((((.((((((.........)))))).))))............-----------.........((-(.(((.....))).)))......... ( -17.30)
>consensus
UCCAUUUAAUAUGCAGAGUGGCGACGUGUUAACGCCACCUUGCCAAACACCAUCA___________CCACCCACCGAAAAAGCCCGAUGCUGUUCCAUACUCUU
............((((.((((((.........)))))).))))................................((...(((.....)))..))......... (-15.64 = -15.64 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:45 2006