Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,717,369 – 3,717,459 |
Length | 90 |
Max. P | 0.859990 |
Location | 3,717,369 – 3,717,459 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -25.58 |
Energy contribution | -26.83 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.74 |
Structure conservation index | 0.62 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3717369 90 + 20766785 GGAGGCGCAUCUGCUGCUCCAGAGCAGGUCUGGCCCGCGUGGCGGGCCAGCUGGGCUGGGCCAGGGAACCUGUACCAAUGCUGAGCAGCG (((......)))(((((((.(((((.((.(((((((((...)))))))))))..)))((..((((...))))..))....))))))))). ( -46.50) >DroSec_CAF1 600 90 + 1 GGAGUCGCAUCUGCUGCUCCAGAGCAGUUCUGCCCUGGACGUUGGUCCUCCUGGGCUGGGCCAGGGAACCUGUACCAAUGCUGAGCAGCG (((......)))(((((((...((((.....((((.((((....))))....))))(((..((((...))))..))).))))))))))). ( -39.10) >DroSim_CAF1 600 90 + 1 GGAGGCGCAUCUGCUGCUCCAGAGCAGUUCUGCCCUGGACGUUGGUCCUCCUGGGCUGGGCCAGGGAACAUGUACCAAUGCUGAGCAGCG ...((..(((..((((((....))))))....((((((.(.(..((((....))))..))))))))...)))..))...(((....))). ( -36.50) >DroEre_CAF1 579 90 + 1 GGAGGCGAACCUGCUGGUCCACAGCGGGUCUGGCUCGGACGUUGGACCUCCGUGGCUGGGCCAGGGAACCUGUUCCAAUGCUGAGCAGCG ....((((.(((((((.....)))))))))..((((((.(((((((.((((.((((...)))).)))....).))))))))))))).)). ( -44.70) >DroYak_CAF1 600 90 + 1 GGAGGCGAAUCUGCUGCUCCAGAGCUUGUCUGGCCCGGAUGCUGGACCUCCUUGGCUGGGCCAGGGAACCUGUUCCAAUGCUGAGCAGCG (((......)))(((((((...(((....(((((((((.....((....))....)))))))))((((....))))...)))))))))). ( -41.30) >DroAna_CAF1 30487 81 + 1 GCA---------CCUGUUCAGGAUCAGGCCUGGCCUGGAUAGUGCGUCUGCCGGGCUUGGCCCAGGUCUCGGAACCGAUGCUGAGGAGUG ...---------.((.(((((.(((.((((.(((((((.(((.....)))))))))).))))..(((......)))))).))))).)).. ( -37.90) >consensus GGAGGCGCAUCUGCUGCUCCAGAGCAGGUCUGGCCCGGACGUUGGACCUCCUGGGCUGGGCCAGGGAACCUGUACCAAUGCUGAGCAGCG ............(((((((...((((...(((((((((.....((....))....)))))))))((........))..))))))))))). (-25.58 = -26.83 + 1.25)
Location | 3,717,369 – 3,717,459 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -20.03 |
Energy contribution | -21.15 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.55 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3717369 90 - 20766785 CGCUGCUCAGCAUUGGUACAGGUUCCCUGGCCCAGCCCAGCUGGCCCGCCACGCGGGCCAGACCUGCUCUGGAGCAGCAGAUGCGCCUCC .(((((((((((((((..((((...))))..)))).....(((((((((...)))))))))...))))...)))))))............ ( -44.80) >DroSec_CAF1 600 90 - 1 CGCUGCUCAGCAUUGGUACAGGUUCCCUGGCCCAGCCCAGGAGGACCAACGUCCAGGGCAGAACUGCUCUGGAGCAGCAGAUGCGACUCC .(((((((............((((((((((......))))).)))))......(((((((....))))))))))))))............ ( -40.90) >DroSim_CAF1 600 90 - 1 CGCUGCUCAGCAUUGGUACAUGUUCCCUGGCCCAGCCCAGGAGGACCAACGUCCAGGGCAGAACUGCUCUGGAGCAGCAGAUGCGCCUCC .(((((((.((.(((((.....(..(((((......)))))..)))))).)).(((((((....))))))))))))))............ ( -37.00) >DroEre_CAF1 579 90 - 1 CGCUGCUCAGCAUUGGAACAGGUUCCCUGGCCCAGCCACGGAGGUCCAACGUCCGAGCCAGACCCGCUGUGGACCAGCAGGUUCGCCUCC .((.((((.((.(((((.....((((.((((...)))).)))).))))).))..))))..((((.((((.....)))).)))).)).... ( -31.00) >DroYak_CAF1 600 90 - 1 CGCUGCUCAGCAUUGGAACAGGUUCCCUGGCCCAGCCAAGGAGGUCCAGCAUCCGGGCCAGACAAGCUCUGGAGCAGCAGAUUCGCCUCC .((((((((((...((((....))))(((((((.((...((....)).))....)))))))....)))...)))))))............ ( -36.00) >DroAna_CAF1 30487 81 - 1 CACUCCUCAGCAUCGGUUCCGAGACCUGGGCCAAGCCCGGCAGACGCACUAUCCAGGCCAGGCCUGAUCCUGAACAGG---------UGC ((((..((((.(((((((....)))).(((((..(((.((.((.....))..)).)))..)))))))).))))...))---------)). ( -27.60) >consensus CGCUGCUCAGCAUUGGUACAGGUUCCCUGGCCCAGCCCAGGAGGACCAACAUCCAGGCCAGACCUGCUCUGGAGCAGCAGAUGCGCCUCC .((((((((((..(((..(((.....)))..)))(.((.(((.(.....).))).)).)......)))...)))))))............ (-20.03 = -21.15 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:44 2006