Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,706,219 – 3,706,343 |
Length | 124 |
Max. P | 0.999251 |
Location | 3,706,219 – 3,706,312 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -9.88 |
Energy contribution | -10.48 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.24 |
Mean z-score | -2.06 |
Structure conservation index | 0.39 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3706219 93 + 20766785 UUCAUUGUUUCCCAAG---CUUAAUGUGGGAAAGU--UGGCUGCAAUUAACAGACUGCA-ACGAGUGCAGGAGUGCAGGAGCUUCAGGAGCUCCUGAAA (((.((((((((((..---.......))))))(((--((....))))).)))).(((((-.....))))))))..(((((((((...)))))))))... ( -28.80) >DroSec_CAF1 29663 93 + 1 UUCAUUGUUUCCCAAG---CUUAAUGUGGGAAACU--UGGCUGCAAUUAACAGACUGCA-GCGAGUGCAAGAGUGCAGGAGCUGCAGGAGCUCCUGAAA ..((((((((((((..---.......))))))))(--(.((((((.((....)).))))-)).))......))))((((((((.....))))))))... ( -34.10) >DroEre_CAF1 26319 79 + 1 UUCAUUGUUUCGCAAG---CUUAAUGUGGGAAACU--UGGCUGCAAUUAACAGACUGCA-GCGAGUGCAGG--------------AGGAGCUCCUGAAA .......(..((((..---.....))))..).(((--((.(((((.((....)).))))-)))))).((((--------------((...))))))... ( -23.30) >DroWil_CAF1 57421 82 + 1 UUCCCCCUUCCUUUCUGCAUUUAAUGUGGGAAACGAAGGA---AAAUUACAAGACUGCAAACAAAUGCAAGAAGACA--------------CCAGGAGA ((((.(((((.((((..(((...)))..))))..))))).---............((((......))))........--------------...)))). ( -18.10) >DroYak_CAF1 27254 79 + 1 UUCAUUGUUUCUCAAG---CUUAAUGUGGGAAACU--UUGCUGCAAUUAACAGACUGCA-GCGAGUGCAGA--------------AGGAGCUCCUGAAA .......((((...((---(((..(((((....))--((((((((.((....)).))))-))))..)))..--------------..)))))...)))) ( -21.50) >consensus UUCAUUGUUUCCCAAG___CUUAAUGUGGGAAACU__UGGCUGCAAUUAACAGACUGCA_GCGAGUGCAGGA___CA________AGGAGCUCCUGAAA ((((..((((((((............))))))))....................(((((......)))))........................)))). ( -9.88 = -10.48 + 0.60)
Location | 3,706,219 – 3,706,312 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -8.86 |
Energy contribution | -8.90 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.38 |
Mean z-score | -2.88 |
Structure conservation index | 0.35 |
SVM decision value | 3.46 |
SVM RNA-class probability | 0.999251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3706219 93 - 20766785 UUUCAGGAGCUCCUGAAGCUCCUGCACUCCUGCACUCGU-UGCAGUCUGUUAAUUGCAGCCA--ACUUUCCCACAUUAAG---CUUGGGAAACAAUGAA ...((((((((.....)))))))).............((-((((((......))))))))..--..(((((((.......---..)))))))....... ( -28.00) >DroSec_CAF1 29663 93 - 1 UUUCAGGAGCUCCUGCAGCUCCUGCACUCUUGCACUCGC-UGCAGUCUGUUAAUUGCAGCCA--AGUUUCCCACAUUAAG---CUUGGGAAACAAUGAA ...((((((((.....)))))))).............((-((((((......))))))))..--.((((((((.......---..))))))))...... ( -34.30) >DroEre_CAF1 26319 79 - 1 UUUCAGGAGCUCCU--------------CCUGCACUCGC-UGCAGUCUGUUAAUUGCAGCCA--AGUUUCCCACAUUAAG---CUUGCGAAACAAUGAA ...((((((...))--------------))))...((((-((((((......))))))))((--(((((........)))---)))).))......... ( -22.20) >DroWil_CAF1 57421 82 - 1 UCUCCUGG--------------UGUCUUCUUGCAUUUGUUUGCAGUCUUGUAAUUU---UCCUUCGUUUCCCACAUUAAAUGCAGAAAGGAAGGGGGAA ((((((..--------------..((((..((((((((.((((......))))...---......((.....))..))))))))..))))..)))))). ( -20.10) >DroYak_CAF1 27254 79 - 1 UUUCAGGAGCUCCU--------------UCUGCACUCGC-UGCAGUCUGUUAAUUGCAGCAA--AGUUUCCCACAUUAAG---CUUGAGAAACAAUGAA ...((((((...))--------------))))..(((((-((((((......)))))))).(--(((((........)))---)))))).......... ( -20.90) >consensus UUUCAGGAGCUCCU________UG___UCCUGCACUCGC_UGCAGUCUGUUAAUUGCAGCCA__AGUUUCCCACAUUAAG___CUUGAGAAACAAUGAA (((((((......................(((((......))))).((((.....))))........................)))))))......... ( -8.86 = -8.90 + 0.04)
Location | 3,706,235 – 3,706,343 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -17.38 |
Energy contribution | -18.38 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.63 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3706235 108 + 20766785 CUUAAUGUGGGAAAGUUGGCUGCAAUUAACAGACUGCAACGAGUGCAGGAGUGCAGGAGCUUCAGGAGCUCCUGAAACCCAAAACCAGUUA--AGUUAAAGCCAUUCAAU ..........(((...(((((....(((((...(((((.....))))).....(((((((((...))))))))).............))))--).....))))))))... ( -32.30) >DroSec_CAF1 29679 110 + 1 CUUAAUGUGGGAAACUUGGCUGCAAUUAACAGACUGCAGCGAGUGCAAGAGUGCAGGAGCUGCAGGAGCUCCUGAAACCCAAAACCAGUAACCAGUUAAAGCCAUUCAAA .......((((..(((((.(((((.((....)).)))))))))).........((((((((.....))))))))...))))............................. ( -31.40) >DroEre_CAF1 26335 93 + 1 CUUAAUGUGGGAAACUUGGCUGCAAUUAACAGACUGCAGCGAGUGCAGG--------------AGGAGCUCCUGAAACCCAAAACCAGUA---AGUUAAAGCCAUUCAAA ((((.((((((..(((((.(((((.((....)).)))))))))).((((--------------((...))))))...))))....)).))---))............... ( -25.80) >DroYak_CAF1 27270 93 + 1 CUUAAUGUGGGAAACUUUGCUGCAAUUAACAGACUGCAGCGAGUGCAGA--------------AGGAGCUCCUGAAACCCAAAACCAGUA---AGUUAAACCCAUUCGAA ......(((((.(((((.((((...........(((((.....))))).--------------(((....)))............)))))---))))...)))))..... ( -20.90) >consensus CUUAAUGUGGGAAACUUGGCUGCAAUUAACAGACUGCAGCGAGUGCAGG______________AGGAGCUCCUGAAACCCAAAACCAGUA___AGUUAAAGCCAUUCAAA .......((((..((((.((((((.((....)).))))))))))..................((((....))))...))))............................. (-17.38 = -18.38 + 1.00)
Location | 3,706,235 – 3,706,343 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -19.61 |
Energy contribution | -19.93 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.42 |
Structure conservation index | 0.65 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3706235 108 - 20766785 AUUGAAUGGCUUUAACU--UAACUGGUUUUGGGUUUCAGGAGCUCCUGAAGCUCCUGCACUCCUGCACUCGUUGCAGUCUGUUAAUUGCAGCCAACUUUCCCACAUUAAG ......(((((.(((.(--((((.((....((((..((((((((.....)))))))).))))(((((.....))))))).)))))))).)))))................ ( -32.00) >DroSec_CAF1 29679 110 - 1 UUUGAAUGGCUUUAACUGGUUACUGGUUUUGGGUUUCAGGAGCUCCUGCAGCUCCUGCACUCUUGCACUCGCUGCAGUCUGUUAAUUGCAGCCAAGUUUCCCACAUUAAG ....((((.....((((........((...((((..((((((((.....)))))))).))))..))....((((((((......))))))))..)))).....))))... ( -32.80) >DroEre_CAF1 26335 93 - 1 UUUGAAUGGCUUUAACU---UACUGGUUUUGGGUUUCAGGAGCUCCU--------------CCUGCACUCGCUGCAGUCUGUUAAUUGCAGCCAAGUUUCCCACAUUAAG ....((((.....((((---(.........((((..((((((...))--------------)))).))))((((((((......)))))))).))))).....))))... ( -27.10) >DroYak_CAF1 27270 93 - 1 UUCGAAUGGGUUUAACU---UACUGGUUUUGGGUUUCAGGAGCUCCU--------------UCUGCACUCGCUGCAGUCUGUUAAUUGCAGCAAAGUUUCCCACAUUAAG ......((((...((((---(.........((((..((((((...))--------------)))).))))((((((((......)))))))).))))).))))....... ( -28.80) >consensus UUUGAAUGGCUUUAACU___UACUGGUUUUGGGUUUCAGGAGCUCCU______________CCUGCACUCGCUGCAGUCUGUUAAUUGCAGCCAAGUUUCCCACAUUAAG ....((((.....((((.......)))).((((...((((....))))......................((((((((......)))))))).......))))))))... (-19.61 = -19.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:41 2006