Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,700,890 – 3,701,077 |
Length | 187 |
Max. P | 0.743242 |
Location | 3,700,890 – 3,701,006 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.13 |
Mean single sequence MFE | -34.93 |
Consensus MFE | -12.92 |
Energy contribution | -12.48 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.29 |
Mean z-score | -1.86 |
Structure conservation index | 0.37 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3700890 116 + 20766785 GUUUGUAAUGAACUUGCAACGGUGUGCUGCCUCUUGGCUGCGGCAACCACUGUGGGCUGUGUGGCAGCAAUGAGU---GGUUAA-AAUGAAGUGCAUUGUAGUGCUUCACUAAUAUCAAA ..((((((.....)))))).(((((((.(((....))).))...(((((((....((((.....))))....)))---))))..-..(((((..(......)..)))))...)))))... ( -37.30) >DroPse_CAF1 26095 95 + 1 GUUUGUAAUGAACUUGCAACAGAAUGGUGGCAGUACUCGGUGGCAGCCACCAUGGAA-UUGUGAAUGGAGUACGCCUCAGGCGAAACUGAGGCUAA------------------------ ....(((......(..(((....((((((((.((........)).))))))))....-)))..)......)))(((((((......)))))))...------------------------ ( -34.30) >DroSec_CAF1 24373 116 + 1 GUUUGUAAUGAACUUGCAACGGUGUGCUGCCUCUUGGCUGCGGCAACCACUGUGGGCUGUGUGGCAGCAAUGAGU---GGGUAA-AAUGAAGAGCAUUGUAGUGCUUCACUAAAAUCAAA ..((((((.....)))))).((((((((..(((...(((((.(((.((.....))....))).)))))...))).---.)))).-......((((((....))))))))))......... ( -34.40) >DroEre_CAF1 20881 116 + 1 GUUUGUAAUGAACUUGCAACGGUGUGCUGCCUCUUGGCUGCGGCAACCACUGUGGGCAGUGUGGCAGAAACAAGC---GGGCAA-AAUGAAGUGAAUUGUAGUGCUCCACUAAUAUCAAA ((((((..((.((((((.((((((.((.(((....))).))(....)))))))..)))).))..))...))))))---(((((.-.(..(......)..)..))).))............ ( -34.40) >DroYak_CAF1 22037 116 + 1 GUUUGUAAUGAACUUGCAACGGUGUGCUGCCUCUUGGCUGCGGCAACCACUGUGGGCAGCGUGGCAGAAACUAGU---GGGCAA-AAUGAAGUACAUUGUAGUGCUUUAAUAACUUCAGA ........((((.((((.(((((...(((((.((((.(..(((......)))..).))).).)))))..))).))---..))))-..((((((((......)))))))).....)))).. ( -36.00) >DroPer_CAF1 24820 95 + 1 GUUUGUAAUGAACUUGCAACAGAAUGGUGGCAGUACUCGGUGGCAGCCACCAUGGAA-UUGUGAAUGGAAUACGCCUCAGGCGAAACUGAGGCUAA------------------------ ((((.....))))(..(((....((((((((.((........)).))))))))....-)))..).........(((((((......)))))))...------------------------ ( -33.20) >consensus GUUUGUAAUGAACUUGCAACGGUGUGCUGCCUCUUGGCUGCGGCAACCACUGUGGGC_GUGUGGCAGAAAUAAGC___GGGCAA_AAUGAAGUGAAUUGUAGUGCUUCACUAA_AUCAAA ((((.....))))((((..(((....))).......(((((.(((.((.....))....))).)))))............)))).................................... (-12.92 = -12.48 + -0.44)
Location | 3,700,890 – 3,701,006 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.13 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -6.86 |
Energy contribution | -7.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.23 |
Mean z-score | -2.07 |
Structure conservation index | 0.24 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3700890 116 - 20766785 UUUGAUAUUAGUGAAGCACUACAAUGCACUUCAUU-UUAACC---ACUCAUUGCUGCCACACAGCCCACAGUGGUUGCCGCAGCCAAGAGGCAGCACACCGUUGCAAGUUCAUUACAAAC ((((....(((((...))))).((((.((((....-......---.(((...(((((....(((((......)))))..)))))...)))(((((.....))))))))).)))).)))). ( -29.50) >DroPse_CAF1 26095 95 - 1 ------------------------UUAGCCUCAGUUUCGCCUGAGGCGUACUCCAUUCACAA-UUCCAUGGUGGCUGCCACCGAGUACUGCCACCAUUCUGUUGCAAGUUCAUUACAAAC ------------------------...(((((((......)))))))(((....(((..(((-(...(((((((((((......)))..))))))))...))))..)))....))).... ( -30.30) >DroSec_CAF1 24373 116 - 1 UUUGAUUUUAGUGAAGCACUACAAUGCUCUUCAUU-UUACCC---ACUCAUUGCUGCCACACAGCCCACAGUGGUUGCCGCAGCCAAGAGGCAGCACACCGUUGCAAGUUCAUUACAAAC ........((((((((((......)))........-......---.(((...(((((....(((((......)))))..)))))...)))(((((.....)))))...)))))))..... ( -28.40) >DroEre_CAF1 20881 116 - 1 UUUGAUAUUAGUGGAGCACUACAAUUCACUUCAUU-UUGCCC---GCUUGUUUCUGCCACACUGCCCACAGUGGUUGCCGCAGCCAAGAGGCAGCACACCGUUGCAAGUUCAUUACAAAC ...((.((.(((((.(((.................-.)))))---))).)).))(((..(((((....)))))((((((.(......).))))))........))).............. ( -26.87) >DroYak_CAF1 22037 116 - 1 UCUGAAGUUAUUAAAGCACUACAAUGUACUUCAUU-UUGCCC---ACUAGUUUCUGCCACGCUGCCCACAGUGGUUGCCGCAGCCAAGAGGCAGCACACCGUUGCAAGUUCAUUACAAAC ..((((((((((..........)))).)))))).(-((((..---....((....))...((((((.....((((((...))))))...))))))........)))))............ ( -24.70) >DroPer_CAF1 24820 95 - 1 ------------------------UUAGCCUCAGUUUCGCCUGAGGCGUAUUCCAUUCACAA-UUCCAUGGUGGCUGCCACCGAGUACUGCCACCAUUCUGUUGCAAGUUCAUUACAAAC ------------------------...(((((((......)))))))(((....(((..(((-(...(((((((((((......)))..))))))))...))))..)))....))).... ( -31.00) >consensus UUUGAU_UUAGUGAAGCACUACAAUGCACUUCAUU_UUGCCC___ACUUAUUCCUGCCACAC_GCCCACAGUGGUUGCCGCAGCCAAGAGGCAGCACACCGUUGCAAGUUCAUUACAAAC ...............................................................((..((.(((((((((..........)))))).))).)).))............... ( -6.86 = -7.53 + 0.67)
Location | 3,700,967 – 3,701,077 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -19.27 |
Consensus MFE | -11.89 |
Energy contribution | -11.57 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.20 |
Mean z-score | -1.66 |
Structure conservation index | 0.62 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3700967 110 - 20766785 ACUCUUUAUUAAUU---------CUGUGCUCAACUAGUGAGUUUACUAAUGUCCUACUUAAUAAGUGCAACAAAUGUUCAUUUGAUAUUAGUGAAGCACUACAAUGCACUUCAUUUUAA ..............---------..((((.....(((((..((((((((((((.........(((((.(((....)))))))))))))))))))).)))))....)))).......... ( -25.30) >DroSec_CAF1 24450 110 - 1 ACUCUUUAUUAAUU---------CUAUGCUCAACUAGUGAAUUUACUAAUGACCUCCUUAAUAGGUGCGACAAAUGUUUAUUUGAUUUUAGUGAAGCACUACAAUGCUCUUCAUUUUAC ..............---------....((.....(((((..((((((((..((((.......))))....(((((....)))))...)))))))).)))))....))............ ( -15.80) >DroEre_CAF1 20958 104 - 1 ------------UUAAUUGUAUACUCUGUUCAACUAGUGAUUUUACUAAUGACC---UUAAUAAUAGUAACAAAUGUUCUUUUGAUAUUAGUGGAGCACUACAAUUCACUUCAUUUUGC ------------..(((((((.....(((((.(((((((...((((((......---.......))))))((((......)))).))))))).))))).)))))))............. ( -16.72) >consensus ACUCUUUAUUAAUU_________CUAUGCUCAACUAGUGAAUUUACUAAUGACCU_CUUAAUAAGUGCAACAAAUGUUCAUUUGAUAUUAGUGAAGCACUACAAUGCACUUCAUUUUAC ...........................((.....(((((...(((((((((..........((((((.(((....))))))))).)))))))))..)))))....))............ (-11.89 = -11.57 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:34 2006