Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,677,769 – 3,677,873 |
Length | 104 |
Max. P | 0.945412 |
Location | 3,677,769 – 3,677,873 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.00 |
Mean single sequence MFE | -32.36 |
Consensus MFE | -20.62 |
Energy contribution | -22.06 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.64 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3677769 104 - 20766785 CACAAUGCCUGUGGAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU-UAUCCUCUUAGCUCC-GCAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCA-------------- ......(((((.(.......(((((.(((((...))))).)))))..))))))-....((((.(((((.-.....))))).))))(....)((((......)))).-------------- ( -33.70) >DroSim_CAF1 10032 116 - 1 CAUAAUAGAUGUAAAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGCUCC-ACAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUUCUUAAGUUAA-- .......(((..........(((((.(((((...))))).))))).....(((-((((((((.(((((.-.....))))).))).(....)...))))))))))).............-- ( -34.10) >DroEre_CAF1 8978 116 - 1 CACAAUAGCUGUAUAAUCAGCUUGCAUCUGCGGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGCUAC-AAAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAAUGAAGCUAU-- ....((((((.(((......(((((.(((((...))))).))))).....(((-((((((((.((((..-......)))).))).(....)...))))))))......))).))))))-- ( -35.90) >DroYak_CAF1 6761 116 - 1 AACAAUAGACGUAGAAUCAGCUUGCAUCUGCGGCGCAGAAGCAAGAACCAGGU-UUUCCUCUUAGAUAC-GAAAAGACCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAUUUAAGUUAU-- .......(((.((((.....(((((.(((((...))))).))))).....(((-((((((((.((....-........)).))).(....)...))))))))......)))).)))..-- ( -26.20) >DroAna_CAF1 3697 119 - 1 CUUG-AAUUUCUUAAAUCAGCUUGCCUCUGCCGCGCAGAAACAAGUACCAAGAGAUUCGUCUUUGCUCUUAAAAAGAACUCGGAGCGCAAGGACGGAGAAUCAUCACUUAUAAUCGAAGG ((((-((((((((......(((((..(((((...)))))..)))))...)))))))))((((((((.(((.....(....).))).)))))))).)))...................... ( -31.90) >consensus CACAAUAGAUGUAAAAUCAGCUUGCAUCUGCCGCGCAGAAGCAAGAACCAGGU_UUUCCUCUUAGCUCC_AAAAAGAGCUCAGAGCGCAAGGAUGGAGAAUCAUCAUAUUUAAGCUAA__ ................((..(((((.(((((...))))).)))))..(((........((((.(((((.......))))).))))(....)..))).))..................... (-20.62 = -22.06 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:26 2006