Locus 759

Sequence ID 2R_DroMel_CAF1
Location 3,677,514 – 3,677,634
Length 120
Max. P 0.745343
window1320

overview

Window 0

Location 3,677,514 – 3,677,634
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.50
Mean single sequence MFE -46.26
Consensus MFE -39.84
Energy contribution -39.52
Covariance contribution -0.32
Combinations/Pair 1.16
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value 0.46
SVM RNA-class probability 0.745343
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3677514 120 + 20766785
CCAGGGUACUGGUUCUUGUGCCCACUCGUGAGCUGGGCGCCCAGGUUUACCAGGUGACAAAGCAAUUGUGCCAGUUCACCACUAUUGAUGUGGGUCUGGCAAUUGGUGGUCUGGAUGUGA
((((....)))).....(((((((..(....).)))))))((((..(.(((((....)..........((((((....((((.......))))..))))))..)))))..))))...... ( -47.70)
>DroSim_CAF1 9774 120 + 1
CCAGGGUACUGGUUCUUGUGCCCACUCGUGAGCUGGGCGCCCAGGUCUACCAGGUGACAAAGCAGUUGUGCCAGUUCACCAGUAUUGAUGUGGGUCUGGCAAUUGGUGGUCUGGAUGUGA
((((....)))).....(((((((..(....).)))))))(((((.(((((((....)..........(((((((((((..........))))).))))))..)))))))))))...... ( -48.50)
>DroEre_CAF1 8720 120 + 1
CCAGAGUACUGGUUCUAGUGCCCACUCGUGAGCUGGGCGCCCAGGUCUACCAGGUCACAAAGCAGUUGUGCCAGUUCACUAGUAUCGAUGUGGGUCUGGCCAUUGGCGGCUUGGAUGUGA
..(((...((((.....(((((((..(....).))))))))))).))).(((((((.....((...((.((((((((((..........))))).)))))))...)))))))))...... ( -44.00)
>DroYak_CAF1 6503 120 + 1
CCAGGGUGCUGGUUUUAGUGCCCACUCGUGAGCUGGGCGCCCAGGUCUACCAGGUGACAAAGCAGUUGUGCCAGUUCACUAGUAUUGAUGUGGGUCUGGCCAUUGGCGGUUUGGAUGUGA
(((((.(((..((.((((.(((((((((((((((((.((((..((....)).))))((((.....)))).))))))))).......)).))))))))))..))..))).)))))...... ( -45.51)
>DroAna_CAF1 3440 120 + 1
CCAGAGUCCUGGUUUUGGUGCCCACUCGUGAGCUGGGUGCUCAGGUCUAUCAGGUUACCAAGCAACUGUGCCAGUUCACGAGCAUCGACGUUGGUCUGGCCAUCGGUGGCUUGGAUGUAA
.......(((((((((((..((((..(....).))))..).))))...))))))...((((((.((((.(((((..((((........)).))..)))))...)))).))))))...... ( -45.60)
>consensus
CCAGGGUACUGGUUCUAGUGCCCACUCGUGAGCUGGGCGCCCAGGUCUACCAGGUGACAAAGCAGUUGUGCCAGUUCACCAGUAUUGAUGUGGGUCUGGCCAUUGGUGGUUUGGAUGUGA
((((....)))).....(((((((((....)).)))))))(((((.(((((((((......))......((((((((((..........))))).)))))..))))))))))))...... (-39.84 = -39.52 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006