Locus 756

Sequence ID 2R_DroMel_CAF1
Location 3,675,868 – 3,675,988
Length 120
Max. P 0.812590
window1315

overview

Window 5

Location 3,675,868 – 3,675,988
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -39.60
Consensus MFE -33.22
Energy contribution -32.14
Covariance contribution -1.08
Combinations/Pair 1.32
Mean z-score -1.64
Structure conservation index 0.84
SVM decision value 0.65
SVM RNA-class probability 0.812590
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3675868 120 - 20766785
AACUACAGGUACAACAAGGAACACGGACUGGACACCAAGGAGCAGGAGAGACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAGUUGGAUGCCAAGUUGGCCGCCCAGUAGUCGUAGGGU
..((((.(.(((............((........))..((.((.(((..((((.(((((....)))))))))..))).((((((((((...)))).)))))))))).))).).))))... ( -42.50)
>DroSim_CAF1 7891 120 - 1
AACUACAGGUACAACAAGGAACACGGACUGGACACCAAGGAGCAGGAGAAACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAAUUGGACGCCAAGUUGGCCGCUCAGUAGUCGUAGGGU
..((((.(.(((............((........))...((((.(((..((((.(((((....)))))))))..))).((((((((((...)).)))))))))))).))).).))))... ( -43.60)
>DroEre_CAF1 7065 120 - 1
AACUAUAAGUACAAUAAGGAACACGGACUGGACACCAAAGAGCAGGAGCGGCGGCUCAGGGAACUGGGCAUUGAUCUGGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGUCAUAGAGU
..((((.(.(((............((........))........((.(((((.((((((....))))))...((..((((((....)).).)))..)).))))))).))).).))))... ( -37.40)
>DroYak_CAF1 4863 120 - 1
AACUAUAAGUACAACAAGGAACAUGGACUGGACACCAAAGAGCAGGAGAGACGGCUCAGGGAACUGGGUGUCGAUCUCGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGAUAUAGGGU
..(((((..(((............(((.(.((((((...((((.(......).))))((....)).)))))).))))(((((((((((...)))).)))))))....)))..)))))... ( -39.30)
>DroAna_CAF1 1764 120 - 1
AACUACAAGUAUAACAAGGAACACGGCCUGGACACCAAAGAGCAAGAGAAGCGACUCUUAGAACUGGGCGUGGAUUUGGGCCAGUUGAACGCUAAAUUGGCCGCUCAGUAGUCGUAGAAU
.(((((.(((....((((...((((.(((((...))).((..((((((......))))).)..)))).))))..))))((((((((........)))))))))))..)))))........ ( -35.20)
>consensus
AACUACAAGUACAACAAGGAACACGGACUGGACACCAAAGAGCAGGAGAGACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGUCGUAGGGU
..((((.(.(((............((........))...(.((.(((..((((.(((((....)))))))))..))).(((((((((.....))).)))))))).).))).).))))... (-33.22 = -32.14 +  -1.08) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:20 2006