Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,675,868 – 3,675,988 |
Length | 120 |
Max. P | 0.812590 |
Location | 3,675,868 – 3,675,988 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.08 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -33.22 |
Energy contribution | -32.14 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.32 |
Mean z-score | -1.64 |
Structure conservation index | 0.84 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3675868 120 - 20766785 AACUACAGGUACAACAAGGAACACGGACUGGACACCAAGGAGCAGGAGAGACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAGUUGGAUGCCAAGUUGGCCGCCCAGUAGUCGUAGGGU ..((((.(.(((............((........))..((.((.(((..((((.(((((....)))))))))..))).((((((((((...)))).)))))))))).))).).))))... ( -42.50) >DroSim_CAF1 7891 120 - 1 AACUACAGGUACAACAAGGAACACGGACUGGACACCAAGGAGCAGGAGAAACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAAUUGGACGCCAAGUUGGCCGCUCAGUAGUCGUAGGGU ..((((.(.(((............((........))...((((.(((..((((.(((((....)))))))))..))).((((((((((...)).)))))))))))).))).).))))... ( -43.60) >DroEre_CAF1 7065 120 - 1 AACUAUAAGUACAAUAAGGAACACGGACUGGACACCAAAGAGCAGGAGCGGCGGCUCAGGGAACUGGGCAUUGAUCUGGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGUCAUAGAGU ..((((.(.(((............((........))........((.(((((.((((((....))))))...((..((((((....)).).)))..)).))))))).))).).))))... ( -37.40) >DroYak_CAF1 4863 120 - 1 AACUAUAAGUACAACAAGGAACAUGGACUGGACACCAAAGAGCAGGAGAGACGGCUCAGGGAACUGGGUGUCGAUCUCGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGAUAUAGGGU ..(((((..(((............(((.(.((((((...((((.(......).))))((....)).)))))).))))(((((((((((...)))).)))))))....)))..)))))... ( -39.30) >DroAna_CAF1 1764 120 - 1 AACUACAAGUAUAACAAGGAACACGGCCUGGACACCAAAGAGCAAGAGAAGCGACUCUUAGAACUGGGCGUGGAUUUGGGCCAGUUGAACGCUAAAUUGGCCGCUCAGUAGUCGUAGAAU .(((((.(((....((((...((((.(((((...))).((..((((((......))))).)..)))).))))..))))((((((((........)))))))))))..)))))........ ( -35.20) >consensus AACUACAAGUACAACAAGGAACACGGACUGGACACCAAAGAGCAGGAGAGACGGCUCAGGGAACUGGGCGUUGAUCUGGGCCAGUUGGACGCCAAGUUGGCCGCCCAGUAGUCGUAGGGU ..((((.(.(((............((........))...(.((.(((..((((.(((((....)))))))))..))).(((((((((.....))).)))))))).).))).).))))... (-33.22 = -32.14 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:20 2006