Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,675,280 – 3,675,379 |
Length | 99 |
Max. P | 0.739928 |
Location | 3,675,280 – 3,675,379 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -27.48 |
Energy contribution | -27.10 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.69 |
Structure conservation index | 0.84 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3675280 99 - 20766785 CAUACGGCAGCAUCCUUGGUAAUCGCGCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCGGUUAGCAGGUGUGCACACACUGUGUUUGCGAUAAGA ......((((((..((((.((((((.((((((((.((.(((....))).)))))))).)).)))))).))))..)))((((...)))).)))....... ( -36.10) >DroSim_CAF1 7308 99 - 1 CAUACGGCAGCAUCCUUGGUAAUCGCGACAGCUGUUUGCUAUCGAUAGGAACAGCUGAGUUCGGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA .....................(((((..(((((((((.(((....)))))))))))).....(((((.((((((....))).))))))))))))).... ( -30.10) >DroEre_CAF1 6437 98 - 1 CAUACCGCG-UUUCCUUGGUAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA ..(((((..-......)))))(((((..((((((.((.(((....))).)))))))).....(((((.((((((....))).))))))))))))).... ( -30.70) >DroYak_CAF1 4144 99 - 1 CAUACCGCGCUUUCCUUGGAAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGACUGCGAUAAGA ......(((.((((....)))).)))..((((((.((.(((....))).)))))))).(((((((((.((((((....))).))))))))).))).... ( -33.40) >consensus CAUACCGCAGCAUCCUUGGUAAUCGCCCCAGCUGAUUGCUAUCGAUAGGAACAGCUGAGUUCAGUCAGCAGGUGUGCACACACUGUGAUUGCGAUAAGA .....................(((((..((((((.((.(((....))).)))))))).....(((((.((((((....))).))))))))))))).... (-27.48 = -27.10 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:19 2006