Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,674,250 – 3,674,363 |
Length | 113 |
Max. P | 0.799401 |
Location | 3,674,250 – 3,674,363 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -19.79 |
Energy contribution | -19.23 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.25 |
Mean z-score | -1.60 |
Structure conservation index | 0.68 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3674250 113 + 20766785 AUAAGGAAUUAACUGCGUAGUUCAAAAACAACAAUGCAAGUUUCGUGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGAAGCUGGGGAAUCAGCUUCUGCACCAC ....((((((...(((((.(((.......))).)))))))))))(((((..(((.......((.....))(((((((((((.......))))))))))).)))..)))))... ( -34.50) >DroPse_CAF1 1760 108 + 1 AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAAAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC ......-....(((.....(((......))----).(((((((......(((((.((..((((((((((....)))).))))))..))))))).......))))))).))).. ( -29.12) >DroSim_CAF1 6278 113 + 1 AUAAGGUAUUAACUGCGUAGUUCAAAAACAAUAAUGCAAAUUUCACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUCAGCUUUUGCACCAC ....(((......(((((.(((.......))).)))))........................((..(((.(((((((((((.......))))))))))).)))...))))).. ( -30.00) >DroEre_CAF1 5400 113 + 1 AUAAGGAAUUAGCAGUGUAGUUUGAAAAAGACAAAACACUUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC ....((..((((.(((((.((((.....))))...))))).))))................(((..(((.((((((((((.........)))))))))).)))...))))).. ( -26.50) >DroYak_CAF1 3118 113 + 1 AUAAGGAAUUAGCUGUGUAGUUGGAAAAAGACAAACCAAGUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC ....((.....(((((((..((....))..))).((((.((.......))))))...........)))).((((((((((.........)))))))))).((....)).)).. ( -27.10) >DroPer_CAF1 969 108 + 1 AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAUAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC ......-.(((((.......(((((((..(----(((.(...........).)))).....)))))))..(((((((((((.......)))))))))))....)))))..... ( -27.10) >consensus AUAAGGAAUUAGCUGAGUAGUUCGAAAAAGACAAUACAAAUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUUAGCUUCUGCACCAC ...................................................(((................(((((((((((.......))))))))))).((....))))).. (-19.79 = -19.23 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:18 2006