Locus 754

Sequence ID 2R_DroMel_CAF1
Location 3,674,250 – 3,674,363
Length 113
Max. P 0.799401
window1313

overview

Window 3

Location 3,674,250 – 3,674,363
Length 113
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.29
Mean single sequence MFE -29.05
Consensus MFE -19.79
Energy contribution -19.23
Covariance contribution -0.55
Combinations/Pair 1.25
Mean z-score -1.60
Structure conservation index 0.68
SVM decision value 0.61
SVM RNA-class probability 0.799401
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3674250 113 + 20766785
AUAAGGAAUUAACUGCGUAGUUCAAAAACAACAAUGCAAGUUUCGUGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGAAGCUGGGGAAUCAGCUUCUGCACCAC
....((((((...(((((.(((.......))).)))))))))))(((((..(((.......((.....))(((((((((((.......))))))))))).)))..)))))... ( -34.50)
>DroPse_CAF1 1760 108 + 1
AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAAAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC
......-....(((.....(((......))----).(((((((......(((((.((..((((((((((....)))).))))))..))))))).......))))))).))).. ( -29.12)
>DroSim_CAF1 6278 113 + 1
AUAAGGUAUUAACUGCGUAGUUCAAAAACAAUAAUGCAAAUUUCACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUCAGCUUUUGCACCAC
....(((......(((((.(((.......))).)))))........................((..(((.(((((((((((.......))))))))))).)))...))))).. ( -30.00)
>DroEre_CAF1 5400 113 + 1
AUAAGGAAUUAGCAGUGUAGUUUGAAAAAGACAAAACACUUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC
....((..((((.(((((.((((.....))))...))))).))))................(((..(((.((((((((((.........)))))))))).)))...))))).. ( -26.50)
>DroYak_CAF1 3118 113 + 1
AUAAGGAAUUAGCUGUGUAGUUGGAAAAAGACAAACCAAGUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAACUGGGGAAUUAGCUUCUGCACCAC
....((.....(((((((..((....))..))).((((.((.......))))))...........)))).((((((((((.........)))))))))).((....)).)).. ( -27.10)
>DroPer_CAF1 969 108 + 1
AUAAAU-AGUAGGUAAGUGGCUCGACAAAG----UACAGAUAUGACAAACCGGUAUGAAGAUGUUGAGAAGGUUCUCUAGCGUCGGCAGCUGGGGAAUUAGUUUCUGCACCAC
......-.(((((.......(((((((..(----(((.(...........).)))).....)))))))..(((((((((((.......)))))))))))....)))))..... ( -27.10)
>consensus
AUAAGGAAUUAGCUGAGUAGUUCGAAAAAGACAAUACAAAUUUAACGUACUGGUAUAAAAAUGUUCAGCAGAUUCUCCAGCGUCGGCAGCUGGGGAAUUAGCUUCUGCACCAC
...................................................(((................(((((((((((.......))))))))))).((....))))).. (-19.79 = -19.23 +  -0.55) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:18 2006