Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,665,734 – 3,665,878 |
Length | 144 |
Max. P | 0.985951 |
Location | 3,665,734 – 3,665,842 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -17.84 |
Energy contribution | -18.65 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.15 |
Mean z-score | -2.00 |
Structure conservation index | 0.62 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3665734 108 + 20766785 GAUGGAAAACAUGCAGAUUCAUUC---ACACCAGUUCCGAGUACAUCUG---AUACUGAUUGCAAAAACGUUAGUGCAGUAAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA------ ..........((((((((..((((---...........))))..))))(---.((((.(((((....((((..(((((((...)))))))))))...))))).)))))))))..------ ( -26.80) >DroEre_CAF1 13476 108 + 1 GAUGGGAAACAUGCAGAUUCAUUC---GCACCAGUUCCGAGUACAUCUA---ACACUGAUUGGAAAAACGUUAGUGCAGUGAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA------ ....(....)((((..((((((((---((((...((((((...((....---....)).))))))........(((((((...)))))))..))))))..))))))..))))..------ ( -30.30) >DroYak_CAF1 14244 108 + 1 GAUGGAAAACAUGCAGAUUCAUUC---GCACCAGUUGCGAGUACAUCUG---AUACUGAUUGGAAAAACAUUAGUGCAGUGAUAUUGCACAUGUGAUGCAAUGAGUGCGCAUAA------ ..........((((((((..((((---(((.....)))))))..))))(---.((((.((((.(...((((..(((((((...)))))))))))..).)))).)))))))))..------ ( -31.00) >DroAna_CAF1 11991 116 + 1 ----GACUAUCUGCAGAUUCAUUCUGAGCACUAAUUCAAAGUAUAUCAAGACAUACUUAUUGUAAAAACGCUAUUGCAAUGAUAUUGCACAUGUGCGCCCGUGAGUGCGCAUAAAAAAAA ----.......(((((..((((((..(((.........((((((........))))))...((....)))))...).)))))..)))))..(((((((.(....).)))))))....... ( -27.40) >consensus GAUGGAAAACAUGCAGAUUCAUUC___GCACCAGUUCCGAGUACAUCUA___AUACUGAUUGGAAAAACGUUAGUGCAGUGAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA______ ..........((((((((..((((...((....))...))))..)))).....((((.((((.....((((..(((((((...)))))))))))....)))).)))).))))........ (-17.84 = -18.65 + 0.81)
Location | 3,665,771 – 3,665,878 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.46 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -21.24 |
Energy contribution | -20.86 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.23 |
Mean z-score | -3.05 |
Structure conservation index | 0.74 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3665771 107 + 20766785 GUACAUCUG---AUACUGAUUGCAAAAACGUUAGUGCAGUAAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA---------AAAGCGCAAAGUACGGCCAUAAA-AAGCACAGUUAAA ((((.....---..(((.(((((....((((..(((((((...)))))))))))...))))).)))((((....---------...))))...)))).((......-..))......... ( -30.40) >DroEre_CAF1 13513 107 + 1 GUACAUCUA---ACACUGAUUGGAAAAACGUUAGUGCAGUGAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA---------AAAGCGCAAAGUAUGGCCAUAAA-AAGCACAGUUAAA (((((((((---(......))))).........(((((((...))))))).)))))(((.(((..(((((....---------...)))))...))).))).....-............. ( -29.60) >DroYak_CAF1 14281 107 + 1 GUACAUCUG---AUACUGAUUGGAAAAACAUUAGUGCAGUGAUAUUGCACAUGUGAUGCAAUGAGUGCGCAUAA---------AAAGCGCAAAGUACGGCCAUAAA-AAGCACAGUUAAA ((((.....---..(((.((((.(...((((..(((((((...)))))))))))..).)))).)))((((....---------...))))...)))).((......-..))......... ( -27.00) >DroAna_CAF1 12027 120 + 1 GUAUAUCAAGACAUACUUAUUGUAAAAACGCUAUUGCAAUGAUAUUGCACAUGUGCGCCCGUGAGUGCGCAUAAAAAAAAAAAAAAGCGCAAAGUGCGGCCAUAAAAAAGCACAGUUAAG .........(((.(((.....)))....((((..((((((...))))))..(((((((.(....).)))))))............))))....((((............)))).)))... ( -28.20) >consensus GUACAUCUA___AUACUGAUUGGAAAAACGUUAGUGCAGUGAUAUUGCACAUGUGCGGCAAUGAGUGCGCAUAA_________AAAGCGCAAAGUACGGCCAUAAA_AAGCACAGUUAAA ((((..........(((.((((.....((((..(((((((...)))))))))))....)))).)))((((................))))...))))....................... (-21.24 = -20.86 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:17 2006