Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,664,093 – 3,664,183 |
Length | 90 |
Max. P | 0.750465 |
Location | 3,664,093 – 3,664,183 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 74.81 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -16.14 |
Energy contribution | -17.14 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.53 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3664093 90 + 20766785 GGAGA------------UCUC-CAUUUCGUUGACUAGGUCAAUUUUUUCGACUCAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA (((..------------((((-.....(((((.((.(((.....((((((.(.....)))))))..))))))))-----------))..(((....))))))).)))....... ( -28.60) >DroSim_CAF1 16451 90 + 1 GGAGA------------UCUC-CAUUUCGUUGACUAGGUCAAUUUUUUCGACUGAAUGCGAAAAUCGCCGACAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA (((..------------((((-.....(((((....(((.....((((((.(.....)))))))..)))..)))-----------))..(((....))))))).)))....... ( -27.40) >DroEre_CAF1 11768 93 + 1 GGAAAAGCUAUCGCGAAUCU----------UGACUAGGUCAAUUUUUUCGACAGAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAGAGGCGAGAAUCCAGCGAAA (((...(((..(((((...(----------((((...)))))..((((((.(.....)))))))))).))..))-----------)..((((....))))....)))....... ( -27.00) >DroYak_CAF1 12487 102 + 1 GGAAAAUAUAUCGCGAAUCUC-CAUUUCGUUGACUAGGUCAACUUUUUCGACUGAAUGCGAAAAUCGCCGGCAG-----------CGCUGCCGAAAGGCGAGAAUCCAGCGAAA ..........((((((.((((-......((((((...)))))).....((.(((...(((.....)))...)))-----------))..(((....))))))).))..)))).. ( -31.40) >DroAna_CAF1 10968 106 + 1 AGAG-----AUCGGAGAUCUCGCAUUUCGUUGACUAGGUCAAUUUUUGCGACCGAAUGCGAAAAUUGCCGGCAAAAGGGGGAGACCGCUGCCGCUGCCAUAGCAUCU---CAAA .(((-----(((...))))))((.............((.(((((((((((......)))))))))))))((((..((.((....)).)).....))))...))....---.... ( -36.50) >consensus GGAGA____AUCG___AUCUC_CAUUUCGUUGACUAGGUCAAUUUUUUCGACUGAAUGCGAAAAUCGCCGGCAG___________CGCUGCCGAAAGGCGAGAAUCCAGCGAAA (((.........................((((((...)))))).((((((.......(((.....)))((((((.............)))))).....)))))))))....... (-16.14 = -17.14 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:15 2006