Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,328,485 – 1,328,598 |
Length | 113 |
Max. P | 0.622718 |
Location | 1,328,485 – 1,328,598 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -23.30 |
Energy contribution | -23.93 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.16 |
Mean z-score | -1.64 |
Structure conservation index | 0.69 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1328485 113 - 20766785 UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUUCCCAAGCGAAUGAGCGGCGUGCAAGUGUGUAUCAAAAGAUGCAUUGGACCGUAGAAGGACAUUCUGGUCGGGAUGUG ...(((((..(.....(((((((.((.(-------(((((((.....)))))))).))....)))))))(((((((....)))))))..)..)))))....(((((((....))))))). ( -38.70) >DroSec_CAF1 47004 102 - 1 UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUCCCCAAGCGAAUGU-----------AUGUGUAUCGAAAGAUGCAUUGGACCGUUGAAGGACAAUCUGGUCGGGAUGUG .(((((((((.......)))))..(((.-------.((((((.....))))))..)-----------))(((((((....)))))))..((((((((.....))))..)))))))).... ( -35.20) >DroSim_CAF1 26110 102 - 1 UUCCUGCGAGCAAGAAACUUGCAAGUGU-------GUUCGCUCCCCAAGCGAAUGU-----------AUGUGUAUCGAAAGAUGCAUUGGACCGUUGAAGGACAAUCUGGUCGGGAUGUG .(((((((((.......)))))..(((.-------.((((((.....))))))..)-----------))(((((((....)))))))..((((((((.....))))..)))))))).... ( -35.20) >DroYak_CAF1 14102 114 - 1 UUCCGGCGAGCAAGAAAUUUACAAUUGUACAAAGUGUACACUCCCCAAGUGAAUGAGCGGU------AUAAGUAUCAUAAUAUGCAUUGCACCGUAUAAGGGCAUUCUGGCAGGAAUGUG ..((((.(((.((....))......(((((.....)))))))).))..........(((((------.(((((((......)))).))).)))))....))(((((((....))))))). ( -25.60) >consensus UUCCUGCGAGCAAGAAACUUGCAAGUGU_______GUUCGCUCCCCAAGCGAAUGA___________AUGUGUAUCAAAAGAUGCAUUGGACCGUAGAAGGACAAUCUGGUCGGGAUGUG ..((((((.(((((...))))).............(((((((.....)))))))...............(((((((....))))))).....)))...)))(((((((....))))))). (-23.30 = -23.93 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:50 2006