Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,650,909 – 3,651,017 |
Length | 108 |
Max. P | 0.500000 |
Location | 3,650,909 – 3,651,017 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -20.92 |
Energy contribution | -21.08 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.20 |
Mean z-score | -1.21 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3650909 108 - 20766785 UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUUCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGUUCCUAUUAUCU ...(((((((.((((.....))))...)))))))...........(((((((((...((((((....))))....(((....)))..))..)).)))))))....... ( -34.30) >DroVir_CAF1 11903 102 - 1 UUAAGAUCGCCUGUCUGUCGGAUAUACGCGAUCUCUUCCCGGACAAGGAGCCCUUCUAUGCCGGCUACGGCAAUCGUAUUAAUGUGAGUAUUAAUUU-G--UUUA--- ...(((((((.((((.....))))...)))))))......(((((((...........(((((....)))))......((((((....)))))))))-)--))).--- ( -24.40) >DroSec_CAF1 11472 104 - 1 UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUCCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGGC----UUAUCA ....(((.(((((((.(.(..((((..(((....(((((.......)))))........((((....))))...)))....))))..).).)))))))----..))). ( -33.80) >DroSim_CAF1 14942 104 - 1 UUAAGAUCGCCUGUCUCUCGGACAUCCGCGAUCUGUUUCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGUC----UUAUCU .((((((((((.(.((..(((....))(((......((((......)))).........((((....))))...)))......)..)).).)))))))----)))... ( -34.20) >DroEre_CAF1 11497 93 - 1 UUAAGAUCGCCUGUCUGUCGGACAUCCGUGACCUGUUUCCCGACAAGGAGCCCUUUUACGCCGGCUACGGCAACCGCAUCAAUGUGAGUAUC---------------U .(((((..((((...(((((((((.........)))...)))))).)).))..))))).((((....)))).((((((....)))).))...---------------. ( -22.10) >DroMoj_CAF1 12928 101 - 1 UUAAGAUCGCUUGUCUAUCGGACAUUCGCGAUCUAUUCCCGAAGAAGGAUCCCUUCUAUGCGGGCUAUGGCAAUCGUAUUAAUGUGAGUCAAACUUU----AUUA--- ...(((((((.((((.....))))...)))))))...((((.((((((...))))))...))))...((((...(((....)))...))))......----....--- ( -29.90) >consensus UUAAGAUCGCCUGUCUGUCGGACAUCCGCGAUCUGUUCCCCGACAAGGAGCCCUUCUACGCCGGCUACGGCAACCGCAUCAAUGUAAGUCUGGCGGU_____UUA__U ...(((((((.((((.....))))...)))))))(((((.......)))))........((((....))))..................................... (-20.92 = -21.08 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:09 2006