Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,648,418 – 3,648,510 |
Length | 92 |
Max. P | 0.704309 |
Location | 3,648,418 – 3,648,510 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -15.21 |
Energy contribution | -14.77 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -2.33 |
Structure conservation index | 0.55 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3648418 92 - 20766785 UACACAUUGGUGUACAAUGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGGCCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA ....(((((.....)))))((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -30.50) >DroPse_CAF1 10843 95 - 1 U-CAUAUUGGCAUACAAAGGCAUACAUAAACCACAAAGUGGACACUUUAAGUGA-CACAAAUGGUCGUCUGACC--ACAAAUUCAGUGGCUUAGCCAUA .-.....((((.......(.....).(((.((((...(((..(((.....))).-)))...(((((....))))--)........)))).))))))).. ( -23.10) >DroSim_CAF1 12469 92 - 1 UACACAUUGGUGUACAAUGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGGCCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA ....(((((.....)))))((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -30.50) >DroEre_CAF1 9031 92 - 1 UACACAUUGGUGUACAAAGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGACCACAAACGGUC----GGUCAUGCAAACUCAGUGGCAGAUCCACA (((((....))))).....((((((.--.........))))))((-((..((((((((.....)).----))))))...))))..((((.....)))). ( -29.90) >DroYak_CAF1 8779 96 - 1 UACACAUUGGUGUACAAAGGCCCACG--GACAACGAAGUGGGCAG-UUAAGUGACCACAAACGGUCGGUCGGUCAUGCAAACUCAGUGGCAGAUCCACA (((((....))))).....((((((.--.........))))))((-((..((((((((.........)).))))))...))))..((((.....)))). ( -29.10) >DroPer_CAF1 10989 95 - 1 U-CAUAUUGGCAUACAAAGGCAUACAUAAACCACAAAGUGGACACUUUAAGUGA-CACAAAUGGUCGUCUGACC--ACAAAUUCAGUGGCUUAGCCAUA .-.....((((.......(.....).(((.((((...(((..(((.....))).-)))...(((((....))))--)........)))).))))))).. ( -23.10) >consensus UACACAUUGGUGUACAAAGGCCCACG__GACAACGAAGUGGGCAG_UUAAGUGACCACAAACGGUC____GGUCAUGCAAACUCAGUGGCAGAUCCACA ..(((.(((.....)))..((((((............)))))).......))).........((((....))))...........((((.....)))). (-15.21 = -14.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006