Locus 745

Sequence ID 2R_DroMel_CAF1
Location 3,644,540 – 3,644,654
Length 114
Max. P 0.550044
window1303

overview

Window 3

Location 3,644,540 – 3,644,654
Length 114
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 86.70
Mean single sequence MFE -33.66
Consensus MFE -27.16
Energy contribution -27.24
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -1.47
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.550044
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3644540 114 - 20766785
UGAGAGUUUGAUAGGUAGCAGGACUAGCAAA----AAGUGCUUCAGAUACUCACCUUUAUUUGACGCCCUCGGAAGAGGGUUUCGUUCAUGGCCAAUGCCGUCUCGACAAACUCCUUG
...(((((((..........((((.((((..----...))))(((((((........))))))).((((((....))))))...))))(((((....))))).....))))))).... ( -35.40)
>DroSec_CAF1 5077 114 - 1
UGAGAGAUUGAUAGGUAGCAGGUCUAGCAAA----AAGAGCUUCAGAUACUCACCUUAAUUUGACGCCCUCGGAAGAGGGUUUCGUUCAUGGCCAGUGCCGUCUCGACGAACUCCUUG
.(((((((((..((((((...(((((((...----....)))..)))).)).))))))))))...((((((....))))))((((((.(((((....)))))...))))))))).... ( -34.80)
>DroSim_CAF1 6496 114 - 1
UGAGAGUUUGAUAGGUAGCAGGUCUAGCAAA----AAGAGCUUCAGAUACUCACCUUAAUUUGACGCCCUCGGAAGAGGGUUUCGUUCAUGGCCAGUGCCGUCUCGACGAACUCCUUG
...(((((((..(((..(((((((.(((...----..(((.........)))..........((.((((((....)))))).)))))...))))..)))..)))...))))))).... ( -36.40)
>DroEre_CAF1 5135 117 - 1
UAUGAGUUUAUUAAGUAGCGGGUAUGGUAAA-AGAAAGUGCUUCAUAUACUCACUUUAAUUUGACGCCCUCGGAAGAGGGUUUCGUUCAUGGCCAGAGCCGUCUCGACGAACUCCUUC
...(((((..(..((..((((.(.((((...-..((((((...........)))))).....((.((((((....)))))).)).......)))).).))))))..)..))))).... ( -37.70)
>DroYak_CAF1 5149 118 - 1
UAAGAGUUUAUUAAGUAGCCGGUAUAUUAAAUACAUAGUUCUCCUAAUACUCACUUUAAUUUGACGCCCUCGAAAAAGGGUUUCGUUCAUGGCCAGUGCCGUCUCAACGAACUCCUUC
...((((......((.(((..((((.....))))...)))))......)))).......(((((.....))))).((((..((((((.(((((....)))))...))))))..)))). ( -24.00)
>consensus
UGAGAGUUUGAUAGGUAGCAGGUCUAGCAAA____AAGUGCUUCAGAUACUCACCUUAAUUUGACGCCCUCGGAAGAGGGUUUCGUUCAUGGCCAGUGCCGUCUCGACGAACUCCUUG
...((((((...((((((...(((((((...........)))..)))).)).))))......((.((((((....)))))).))(((.(((((....)))))...))))))))).... (-27.16 = -27.24 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006