Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,643,835 – 3,643,954 |
Length | 119 |
Max. P | 0.841091 |
Location | 3,643,835 – 3,643,926 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.31 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -14.86 |
Energy contribution | -15.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.60 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3643835 91 + 20766785 ---------AAUCC-------AAA-------GCAAUGGCCGAUGAAGAUAUCACAUUGAACGAGGAUCAGCUCCUGGAGUCAUUGGAGGAGACGAACGGGGAGCAAGAGACUGA ---------.((((-------...-------.(((((...((((....)))).))))).....))))..((((((.(.(((.........)))...).)))))).......... ( -22.50) >DroVir_CAF1 4407 109 + 1 UCAAACGACAAAUCAA-----UAAAAGCAAUAUAAUGGCCGAUGAAGAUAUUACUUUAAACGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAACGGCGAACAGGAGACUGA ................-----.................((..(((((......))))).....)).((((((((((...((((((..(....)...)))))).)))))).)))) ( -26.70) >DroWil_CAF1 5283 91 + 1 ---------AAUCA-------CAC-------ACAAUGGCCGAUGAAGAUAUUACUUUGAAUGAGGAUCAGCUGUUGGAGUCGCUGGAGGAGACAAACGGCGAGCAGGAGACUGA ---------.....-------...-------.(((((((.(((((((......))))........))).)))))))...((((((..(....)...)))))).(((....))). ( -24.90) >DroMoj_CAF1 4712 103 + 1 --------UAAAUCAAUA---UAAAAUAAUUAUAAUGGCUGAUGAAGAUAUUACUUUAAACGAGGAUCAGCUUCUGGAGUCGCUGGAAGAGACAAACGGCGAACAGGAGACUGG --------....(((.((---(((.....))))).)))....(((((......))))).........(((((((((...((((((...........)))))).)))))).))). ( -23.70) >DroAna_CAF1 4120 91 + 1 ---------AAUCC-------GCA-------AUAAUGGCCGAUGAAGAUAUUACACUGAAUGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAAUGGCGAGCAGGAGGCCGA ---------.....-------...-------....(((((...............((((.......)))).(((((...((((((..(....)...)))))).)))))))))). ( -23.30) >DroPer_CAF1 7122 105 + 1 ---------AAAACCACUCACAAAAAUUAGCAAAAUGGCUGAUGAAGAUAUCUCAUUGAACGAGGACCAGCUCUUGGAGUCGAUGGAAGAGACCAAUGGCGAGCAGGAGACUGA ---------.......(((......((((((......)))))).......((.....))..)))...(((((((((..((((.(((......))).))))...)))))).))). ( -26.60) >consensus _________AAACC_______AAA_______AUAAUGGCCGAUGAAGAUAUUACAUUGAACGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAACGGCGAGCAGGAGACUGA ..................................................................((((((((((...((((((..(....)...)))))).)))))).)))) (-14.86 = -15.53 + 0.67)
Location | 3,643,846 – 3,643,954 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -20.89 |
Energy contribution | -20.98 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.36 |
Mean z-score | -1.38 |
Structure conservation index | 0.73 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3643846 108 + 20766785 AUGGCCGAUGAAGAUAUCACAUUGAACGAGGAUCAGCUCCUGGAGUCAUUGGAGGAGACGAACGGGGAGCAAGAGACUGAGAUCGCCACAGAGGU---CGAGGUGAGUUGG .((..(((((.........)))))..)).......((((((.(.(((.........)))...).))))))....((((.(..(((((.....)).---)))..).)))).. ( -27.00) >DroVir_CAF1 4436 108 + 1 AUGGCCGAUGAAGAUAUUACUUUAAACGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAACGGCGAACAGGAGACUGAAAUUGUGACUGA---AACAGAGGUAAGUGUG ...(((..(((((......))))).((((...((((((((((...((((((..(....)...)))))).)))))).))))..))))......---......)))....... ( -32.70) >DroGri_CAF1 4524 108 + 1 AUGGCAGAUGAAGAUAUUACUUUAAACGAAGACCAGCUCUUGGAGUCGCUGGAUGAGACAAACGGUGAACAGGAGGCUGAAAUUGUGACUGA---AACAGAGGUGAGUGUU .((.(((.(((((......))))).((((....(((((((((...((((((..((...))..)))))).))))).))))...))))..))).---..))............ ( -25.00) >DroWil_CAF1 5294 108 + 1 AUGGCCGAUGAAGAUAUUACUUUGAAUGAGGAUCAGCUGUUGGAGUCGCUGGAGGAGACAAACGGCGAGCAGGAGACUGAAAUUACCAAUGA---AGUCGAGGUAAGAUAC ................(((((((((.((.....))...(((((..((((((..(....)...)))))).(((....)))......)))))..---..)))))))))..... ( -29.10) >DroMoj_CAF1 4735 108 + 1 AUGGCUGAUGAAGAUAUUACUUUAAACGAGGAUCAGCUUCUGGAGUCGCUGGAAGAGACAAACGGCGAACAGGAGACUGGGAUUGCGACUGA---AGCAGAGGUAAGCGUA ...(((..(((((......))))).((.....((((((((((...((((((...........)))))).)))))).))))..((((......---.))))..)).)))... ( -28.80) >DroAna_CAF1 4131 107 + 1 AUGGCCGAUGAAGAUAUUACACUGAAUGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAAUGGCGAGCAGGAGGCCGAGAUCACCACAGA---GACCGAGGUGAGUUG- .(((((...............((((.......)))).(((((...((((((..(....)...)))))).))))))))))...(((((.(...---....).)))))....- ( -29.10) >consensus AUGGCCGAUGAAGAUAUUACUUUAAACGAGGAUCAGCUCUUGGAGUCGCUGGAGGAGACAAACGGCGAACAGGAGACUGAAAUUGCCACUGA___AACAGAGGUAAGUGUG ...(((..(((((......)))))..(((...((((((((((...((((((..(....)...)))))).)))))).))))..)))................)))....... (-20.89 = -20.98 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:06 2006