Locus 743

Sequence ID 2R_DroMel_CAF1
Location 3,635,861 – 3,635,961
Length 100
Max. P 0.713725
window1300

overview

Window 0

Location 3,635,861 – 3,635,961
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 82.97
Mean single sequence MFE -29.80
Consensus MFE -17.65
Energy contribution -18.32
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -2.82
Structure conservation index 0.59
SVM decision value 0.38
SVM RNA-class probability 0.713725
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3635861 100 + 20766785
-GGCGCCAGCGUA--UCGCCCUUAGCCAAGAAACCCAACUGCACCAUAACCAGUGGUGGAACAACCACCACGACCGCAACACCACUGGUCUCCUUCGGCAGUA
-(((....(((..--.))).....)))..........(((((..........(((((((.....)))))))(((((.........))))).......))))). ( -31.30)
>DroVir_CAF1 1048 102 + 1
CAACUUUACCGU-CCUUGUCCUUUGGCAAAAAGCCAAAUUGCACAAUUACCAGUGGCGGCACCACAACCACUGUGACAGCGCCGCUCUUUUCCUUUGGCAAUA
............-.........(((((.....)))))(((((.(((........((((((.(((((.....))))...).))))))........)))))))). ( -25.99)
>DroSec_CAF1 966 100 + 1
-GGCGCCAGCGUA--UCGCCCUUAGCCAAGAAACCCAACUGCACCAUAACCAGUGGUGGGACAACCACCACGACCACAACACCACUGGUCUCCUUCGGCAGUA
-(((....(((..--.))).....)))..........(((((..........(((((((.....)))))))(((((.........))))).......))))). ( -33.30)
>DroSim_CAF1 966 100 + 1
-GGCGCCAGCGUA--UCGCCCUUAGCCAAGAAACCCAACUGCACCAUAACCAGUGGUGGGACAACCACCACGACCACAACACCACUGGUCUCCUUCGGCAGUA
-(((....(((..--.))).....)))..........(((((..........(((((((.....)))))))(((((.........))))).......))))). ( -33.30)
>DroEre_CAF1 912 100 + 1
-GGCGCCAGCGUA--UCUCCCUUUGCUAAAAAGCCCAACUGCACCAUAACCAGUGGUGGGACAACCACCACGACCACAGCACCACUGUUCUCCUUCGGCAGCA
-(((...((((..--........)))).....)))...((((..........(((((((.....)))))))((..((((.....))))..)).....)))).. ( -28.50)
>DroYak_CAF1 921 100 + 1
-GGCGCCAAUGUG--UCUCCAUUUGCUAAAAAGCCCAACUGCACCAUAACAAGUGGUGGGACAACCACCACGACCACAACACCACUGUUUUCCUUCGGCAGCA
-.(((((..((((--((.......(((....)))..................(((((((.....))))))))).))))(((....)))........))).)). ( -26.40)
>consensus
_GGCGCCAGCGUA__UCGCCCUUAGCCAAAAAACCCAACUGCACCAUAACCAGUGGUGGGACAACCACCACGACCACAACACCACUGGUCUCCUUCGGCAGUA
.(((....(((.....))).....)))..........(((((........((((((((.....................))))))))..........))))). (-17.65 = -18.32 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:04 2006