| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,635,439 – 3,635,540 |
| Length | 101 |
| Max. P | 0.521261 |
| Location | 3,635,439 – 3,635,540 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -21.32 |
| Energy contribution | -22.22 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3635439 101 - 20766785 UUUGGCCUCGCUACUCUCCUUCUUGGCAGCUGAUAUGUUGCCAAAUAUCGAGGUGGUCGGCUUGGCGCCAUCGACGGUACUUGUUGAUUCCUUGGCCGGCA------ ....(((..(((((.(((....((((((((......)))))))).....)))))))).((((.((....(((((((.....))))))).))..))))))).------ ( -37.20) >DroSec_CAF1 535 101 - 1 UUUGGCUUCGCUUCUCUCCUUCUUGGCAGAUGAUAUGUUGCCAAAUAUCGAGGUGGUCGGCUUAGCGCCAUCGACGGUACUUGUUGAUUCCUUGGCCGGCG------ ........(((((((((((.....)).))).(((((........)))))))))))(((((((.((.(..(((((((.....))))))).))).))))))).------ ( -31.70) >DroSim_CAF1 535 101 - 1 UUUGGCUUCGCUGCUCUCCUUCUUGGCAGAUGAUAUGUUGCCAAAUAUCGAGGUUGUCGGCUUAGCGCCAUCGACGGUACUUGUUGAUUCCUUGGCCGGCG------ ...((((((.((((.(........)))))..(((((........)))))))))))(((((((.((.(..(((((((.....))))))).))).))))))).------ ( -32.10) >DroEre_CAF1 481 101 - 1 UUUGGACUCGCUGCUCUCGUUCUUGGCAGCUGAUAUGUUGCCAAAUAUCGAGGUGGUUGUCUUGGCGCCAUCGAUGGUACUUGUUGAUUCCUUGGCCGGAG------ ...((((..((..(.((((...((((((((......))))))))....)))))..)).))))((((((((....)))).(.....)........))))...------ ( -32.90) >DroYak_CAF1 490 101 - 1 UUUGGCCUCGCUGCUCUCCUUCUUGGCAGCUGAUAUGUUGCCAAAUAUGGAGGUGGUCGGCUUGGCGCCAUCGAUGGUACUUGUUGAUUCCUUUGCCGGAG------ ((((((...((..(.((((...((((((((......))))))))....)))))..))((((..((..(((....)))..)).))))........)))))).------ ( -37.00) >DroPer_CAF1 4069 104 - 1 UUC---UGCAUUGCUCUCUUUUUUGGCCGCCAAACUCUUUCCGAAAAUUGAGGUGUUUAGAGUAGUACCAUCUGUGGUACUUGUGCAAACCUUUUCUGCCGAUUUUC ...---(((((((((((....(((((...)))))(((............)))......))))))((((((....))))))..))))).................... ( -21.20) >consensus UUUGGCCUCGCUGCUCUCCUUCUUGGCAGCUGAUAUGUUGCCAAAUAUCGAGGUGGUCGGCUUAGCGCCAUCGACGGUACUUGUUGAUUCCUUGGCCGGCG______ ..((((................(((((((........)))))))....(((((.(((((((..((.(((......))).)).))))))))))))))))......... (-21.32 = -22.22 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006