| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,634,047 – 3,634,151 |
| Length | 104 |
| Max. P | 0.626212 |
| Location | 3,634,047 – 3,634,151 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Mean single sequence MFE | -37.35 |
| Consensus MFE | -23.23 |
| Energy contribution | -23.28 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3634047 104 + 20766785 AUUGCCUGGUC----A---ACACACUUACCUCUUCCAAGACGCCAAUCGUGUGGCGGCAGUCGGGCAUCCUCGAGGCGAAGGUGGAGGUGGUGGGCGAGCUGUAAUCGGAG .(((((((...----.---.))((((.((((((.((....(((((......)))))((..(((((....))))).))...)).))))))))))))))).(((....))).. ( -38.20) >DroVir_CAF1 2819 101 + 1 ------UGCGC----GAGUUAAUGCUUACCUCUUCCAAUAUGCUAAUCGUUUGACGGCAAUCCGGCAUGCGGGACGCAAAGGUGGAGGUGGUGGGCGAAUUGUAAUCAUCG ------.((..----..))...((((((((.((((((...(((...((((.((.(((....))).)).))))...)))....)))))).)))))))).............. ( -34.60) >DroGri_CAF1 2647 99 + 1 ------UGAGU----GGU--UUUGCUUACCUCUUCCAAUAUGCUAAUCGUUUGACGGCAAUCCGGCAUGCGGGACGCAAAUGUGGAUGUGGUGGGCGAAUUGUAAUCAUCG ------(((..----...--((((((((((.(.((((...(((...((((.((.(((....))).)).))))...)))....)))).).))))))))))......)))... ( -32.90) >DroYak_CAF1 2987 104 + 1 AUUCCCUGGAC----A---ACAGACUUACCUCUUCCAGGACGCCAAUCGUGUGGCGGCAGUCGGGCAUCCGGGAGGCGAAGGUGGAGGUGGUGGGCGAGCUGUAGUCGGAG ..(((...(((----.---((((.((((((.((((((...((((..(((..((.(.(....).).))..)))..))))....)))))).))))))....)))).)))))). ( -40.40) >DroMoj_CAF1 3296 97 + 1 ------UGGAC----G----AAUGCUUACCUCUUCCAAUAUGCUAAUCGUUUGACGGCAAUCCGGCAUGCGGGAUGCAAACGUGGAGGUGGUGGGCGAAUUGUAAUCGUCG ------..(((----(----(.((((((((.((((((...(((...((((.((.(((....))).)).))))...)))....)))))).))))))))........))))). ( -37.60) >DroAna_CAF1 2230 103 + 1 -----CCGGAGGACUC---AAAUACUCACCUCUUCCAGUAUGGCUAUCGUCUGGCGGCAGUCGGGCAUCCGGGAGGCGAAGGUGGAGGUGGUGGGCGAGUUGUAAUCGGAG -----(((((.(((((---.....((((((.((((((.(.(.((....(((((((....)))))))...(....))).).).)))))).)))))).))))).)..)))).. ( -40.40) >consensus ______UGGAC____G___AAAUACUUACCUCUUCCAAUAUGCCAAUCGUUUGACGGCAAUCCGGCAUCCGGGAGGCAAAGGUGGAGGUGGUGGGCGAAUUGUAAUCGGAG ........................((((((.((((((...(((...(((..((.(........).))..)))...)))....)))))).))))))................ (-23.23 = -23.28 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:02 2006