Locus 739

Sequence ID 2R_DroMel_CAF1
Location 3,616,897 – 3,616,995
Length 98
Max. P 0.583079
window1294

overview

Window 4

Location 3,616,897 – 3,616,995
Length 98
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.05
Mean single sequence MFE -22.27
Consensus MFE -15.96
Energy contribution -16.52
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.30
Structure conservation index 0.72
SVM decision value 0.10
SVM RNA-class probability 0.583079
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3616897 98 + 20766785
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUGAUCUUUUCCAGCAAAAUCUAAAAGACAAUAAAA-GUUGACG-----------AGUAAACC
((((.((......(((..((((((((.((((.((.(((((....)))))..))))))))))))))))).......((((....-)))).))-----------)))).... ( -22.30)
>DroGri_CAF1 6695 91 + 1
UACUACGUAUCAUGAUCAUUUGCUGGCAGAAUGAUAACCACCAAUUGUUGAUUUUUUCCAGCAAUACCUGAAAA-GAAUUGAAC------------------AUUAUACA
......((((.(((.(((.(((((((.((((...((((........))))...)))))))))))...((....)-)...))).)------------------)).)))). ( -20.20)
>DroSec_CAF1 4474 98 + 1
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUGAUCUUUUCCAGCAAAAUCUAUAAGACAAUAUAA-GUUGAUA-----------AGUAAGCC
.(((((..((((.(((..((((((((.((((.((.(((((....)))))..)))))))))))))))))((((......)))).-..)))).-----------.)).))). ( -22.80)
>DroSim_CAF1 2127 98 + 1
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUGAUCUUUUCCAGCAAAAUCUAUAAGACAAUAUAA-GUUGACA-----------AGUAAGCC
.(((((.......(((..((((((((.((((.((.(((((....)))))..))))))))))))))))).......((((....-))))...-----------.)).))). ( -21.70)
>DroEre_CAF1 5847 98 + 1
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUAAUCUUUUCCAGCAAAAUCUAAAAAGCAAUAAAA-GGAGAUA-----------AGUGAGCC
.(((((..(((.......((((((((.((((.((.(((((....)))))..)))))))))))))).(((..............-)))))).-----------.)).))). ( -20.84)
>DroYak_CAF1 3824 109 + 1
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUGAUCUUUUCCAGCAAAAUCUAAAAGGCAAUAGAA-UAGAUUCAUUUAUCUUGCAUUAUGCA
......(((((.......((((((((.((((.((.(((((....)))))..)))))))))))))).((((........)))).-..)))))........(((.....))) ( -25.80)
>consensus
UGCUGCGAAUCAUGAUCAUUUGUUGGCAGAACGAGAGCCACCAGUGGUUGAUCUUUUCCAGCAAAAUCUAAAAGACAAUAAAA_GUUGAUA___________AGUAAGCC
(((((.(((....(((((.(((.((((.........)))).)))....)))))..))))))))............................................... (-15.96 = -16.52 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:58 2006