Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,609,224 – 3,609,371 |
Length | 147 |
Max. P | 0.647033 |
Location | 3,609,224 – 3,609,338 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.91 |
Mean single sequence MFE | -34.65 |
Consensus MFE | -27.50 |
Energy contribution | -28.78 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.26 |
Mean z-score | -1.81 |
Structure conservation index | 0.79 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3609224 114 + 20766785 GACAGCUAGCGUCUUUUUGGUGUCAACUAUCAGUUUGCGAUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCCACGAGCUCUUUUUCUUCUUCUG ...((((..(((......(((((((.(((((((..((((....))))((((((((.....))))))))........))))))).))))))).)))))))............... ( -36.40) >DroVir_CAF1 8151 114 + 1 CGCAGCUAGCGACUUUUUUUGAUCCACAAUCAGCUUUCGAUGACGCACCUCUAGUUUCAUGCUGGGACUCGGCGGUUUUGUUGAUGAUACUUUAGCCAGCUUUUUCUUCUUCUG ...((((.((........(((((.....)))))...((((..(...(((.(((((..(.....)..))).)).))).)..))))..........)).))))............. ( -20.70) >DroSec_CAF1 14328 114 + 1 GACAGCUAGCGUCUUCUUGGUGUCAACUAUCAGUUUGCGCUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUUUG (((.......)))((((((((((((.(((((((..(((((....)).((((((((.....))))))))...)))..))))))).))))))))).)))................. ( -41.00) >DroSim_CAF1 15927 114 + 1 GACAGCUAGCGUCUUCUUGGUGUCAACUAUCAGUUUGCGCUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUUUUCUUUUG (((.......)))((((((((((((.(((((((..(((((....)).((((((((.....))))))))...)))..))))))).))))))))).)))................. ( -41.00) >DroEre_CAF1 14580 114 + 1 GGCAGCUAGCGUUUUCUUGGUGUCAACUAUCAAUUUUCGAUAACGCACUUCCAUCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUCUG .((.....))(..((((((((((((.(((((((.....(....)((.((((((((.....))))))))...))...))))))).))))))))).)))..).............. ( -33.30) >DroYak_CAF1 14560 114 + 1 GGCAGCUAGCGUCUUCUUGGUGUCAACUAACAAUUUGCGAUUACGCACUUCCACCUUCAUGGUUGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCCUCUUUUG ((.((..((...(((.(((((((((..........((((....))))..((((((......((((....)))).....))))))))))))))).)))..))..))))....... ( -35.50) >consensus GACAGCUAGCGUCUUCUUGGUGUCAACUAUCAGUUUGCGAUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUCUG ............(((.(((((((((.(((((((..((((....))))((((((((.....))))))))........))))))).))))))))).)))................. (-27.50 = -28.78 + 1.28)
Location | 3,609,263 – 3,609,371 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -28.84 |
Energy contribution | -28.73 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.30 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3609263 108 + 20766785 AUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCCACGAGCUCUUUUUCUUCUUCUGAAGAGGAGACCACACUGGUGUGGCCUUUGCUUU .....(((((((((((.....)))))))).(.(((((.((((((.......))))(..(((((((((.......)))))))))..).))..))))).)....)))... ( -41.20) >DroVir_CAF1 8190 108 + 1 AUGACGCACCUCUAGUUUCAUGCUGGGACUCGGCGGUUUUGUUGAUGAUACUUUAGCCAGCUUUUUCUUCUUCUGCAGCGGUGACCACGAUAUUGGACCCUUUGGCUG ..((((.(((.(((((..(.....)..))).)).)))..))))..........((((((((.............))((.(((..(((......)))))))).)))))) ( -22.32) >DroSec_CAF1 14367 108 + 1 CUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUUUGAAGAGGAGACCACACGGGUGUGGGCUUUGCUUU .....(((((((((((.....)))))))).(.((((((..((((........((.....))(((((((((....))))))))).))))..)))))).)....)))... ( -40.10) >DroSim_CAF1 15966 108 + 1 CUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUUUUCUUUUGAAGAGGAGACCACACGGGUGUGGGCUUUGCUUU .....(((((((((((.....)))))))).(.(((((((((((.....))))))((.((((((((((((.....))))))))))..)).))))))).)....)))... ( -38.10) >DroEre_CAF1 14619 108 + 1 AUAACGCACUUCCAUCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUCUGAAGAGGAGACCACACGGGUGUCGGUUUUGCUUU .....(((((((((((.....)))))))).((((((((..((((........((.....))(((((((((....))))))))).))))..))))))))....)))... ( -40.40) >DroYak_CAF1 14599 108 + 1 AUUACGCACUUCCACCUUCAUGGUUGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCCUCUUUUGAAGAGGAGACCACACGGGUGUCGGCUUUGCUUU .....((((.((((((......((((....)))).....)))))).)...((((((.((....((((((((.....))))))))....))...))))))...)))... ( -38.10) >consensus AUUACGCACUUCCACCUUCAUGGUGGGAGACGGCACCUUGGUGGAUGAUACCGACGAGUUCUUUUUCUUCUUCUGAAGAGGAGACCACACGGGUGUGGGCUUUGCUUU .....(((((((((((.....)))))))).(.(((((...((((...........(....)..((((((((.....))))))))))))...))))).)....)))... (-28.84 = -28.73 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006