Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,607,695 – 3,607,793 |
Length | 98 |
Max. P | 0.574926 |
Location | 3,607,695 – 3,607,793 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 83.49 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -22.90 |
Energy contribution | -23.35 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.18 |
Mean z-score | -1.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3607695 98 - 20766785 --AAAAACC--UUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC --....(((--(((....)))))).........((.(((...(((((((.(((((.((..(((((.....)))))..)).))))).)))))))...))).)) ( -33.90) >DroPse_CAF1 38800 99 - 1 --GAUAUCCCACUUGAUGAGAGACGCUCUC-ACUCACCGCCCGCGCAAGAUGUCGCAUCUUUCGUCUCUCCCGUAUUAUCCGGCGCUUGGCCACGCCAGGAC --...............((((((((.....-.......((....))((((((...)))))).))))))))........(((((((........)))).))). ( -25.40) >DroSec_CAF1 12778 98 - 1 --CAUUUCC--CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGCCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC --....(((--(...((((...(......)...)))).((..(((((((.(((((.((..(((((.....)))))..)).))))).))))))).)).)))). ( -34.60) >DroSim_CAF1 12940 98 - 1 --CAUUUCC--CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGCCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC --....(((--(...((((...(......)...)))).((..(((((((.(((((.((..(((((.....)))))..)).))))).))))))).)).)))). ( -34.60) >DroEre_CAF1 12980 97 - 1 --CAUUUUU--UUGAGUGUUAGGUAUU-UCAACCCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUUUCGCGGAUUAUACGGCGCUUGGCCACGCCGGGGC --.......--..(((((...(((...-...)))...)))))(((((((.(((((.((..(((((.....)))))..)).))))).))))))).((....)) ( -31.90) >DroYak_CAF1 12955 100 - 1 AUCAUUUUU--AUAAGUGUUGGGUAUUUUCAACCCACCGCUCUGGCCAACUGGCGCAUCUUUCGUCUCUCUCGAAUUAUCCGGCGCUUGGCCACGCCGGGGC ..(((((..--..))))).(((((.......)))))(((...((((((...(((((....((((.......)))).......)))))))))))...)))... ( -31.00) >consensus __CAUUUCC__CUAAGUGUAAGGUAUUUUCAACGCACCGCUCUGGCCAACUGUCGCAUUUUUCGUCUCUCGCGGAUUAUCCGGCGCUUGGCCACGCCGGGGC ....................................(((.(.(((((((.(((((.((..((((.......))))..)).))))).))))))).).)))... (-22.90 = -23.35 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:55 2006