Locus 736

Sequence ID 2R_DroMel_CAF1
Location 3,601,313 – 3,601,420
Length 107
Max. P 0.534394
window1290

overview

Window 0

Location 3,601,313 – 3,601,420
Length 107
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 79.51
Mean single sequence MFE -32.80
Consensus MFE -22.15
Energy contribution -21.68
Covariance contribution -0.47
Combinations/Pair 1.32
Mean z-score -1.20
Structure conservation index 0.68
SVM decision value 0.00
SVM RNA-class probability 0.534394
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3601313 107 + 20766785
AGAUC---GAAGUAUAUACACUACCAUAAAUUUCGGUAUGGCCGAUGGAAAACAGGGCUGGACAUGCCUCCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA
..(((---(((((.(((........))).))))))))...(((.((((......((((.......))))..((((((.(((....))).)))))))))).)))....... ( -33.20)
>DroSec_CAF1 6336 107 + 1
AGAUC---GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACUUGCCUUCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA
..(((---(((((................)))))))).((((.(((((....((((......))))))))).(((((((((..(((.......))).))))))))))))) ( -31.89)
>DroSim_CAF1 6402 107 + 1
AGAUC---GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACAUGCCUUCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA
.((.(---(.........((.((((.........))))))(((.(.((.....(((((.......))))).((((((.(((....))).)))))))).).)))..)))). ( -30.40)
>DroEre_CAF1 6498 107 + 1
AGAUC---GAAGCAGAUACACCACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACGGCCCUUCUGAUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA
..(((---......)))................((((...(((.(.((.....((((((....))))))..((((((.(((....))).)))))))).).)))))))... ( -34.40)
>DroYak_CAF1 6490 94 + 1
----------------UACACUACCAUAAAUUCCGGAAUGGCCGAGGGAAAACAGGGCUGGACGUGCCUUUUGAUGCUCAUAUGUGUGAGCAUCACCGUGGGCACCGUCA
----------------.......................((((..(......)..)))).(((((((((..((((((((((....))))))))))....))))).)))). ( -33.50)
>DroAna_CAF1 8940 102 + 1
AAGCCAGUGAAGAAAGU--------GAAGAUUCCAUCAUGGCUGAGGGUCAACAGGGAUGGACUUUCAUGCUGAUGUUCAUCUGCAUUUUUGUCACCCUGGGCAGCGUCA
..(((.((((.((((((--------(.((((..(((((..((((((((((..........)))))))).)))))))...)))).))))))).))))....)))....... ( -33.40)
>consensus
AGAUC___GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACAUGCCUUCUGAUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA
.................................(((....(((.(.((......((((.......))))..((((((.(((....))).)))))))).).))).)))... (-22.15 = -21.68 +  -0.47) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:54 2006