Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,601,313 – 3,601,420 |
Length | 107 |
Max. P | 0.534394 |
Location | 3,601,313 – 3,601,420 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -22.15 |
Energy contribution | -21.68 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.32 |
Mean z-score | -1.20 |
Structure conservation index | 0.68 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3601313 107 + 20766785 AGAUC---GAAGUAUAUACACUACCAUAAAUUUCGGUAUGGCCGAUGGAAAACAGGGCUGGACAUGCCUCCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA ..(((---(((((.(((........))).))))))))...(((.((((......((((.......))))..((((((.(((....))).)))))))))).)))....... ( -33.20) >DroSec_CAF1 6336 107 + 1 AGAUC---GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACUUGCCUUCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA ..(((---(((((................)))))))).((((.(((((....((((......))))))))).(((((((((..(((.......))).))))))))))))) ( -31.89) >DroSim_CAF1 6402 107 + 1 AGAUC---GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACAUGCCUUCUGGUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA .((.(---(.........((.((((.........))))))(((.(.((.....(((((.......))))).((((((.(((....))).)))))))).).)))..)))). ( -30.40) >DroEre_CAF1 6498 107 + 1 AGAUC---GAAGCAGAUACACCACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACGGCCCUUCUGAUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA ..(((---......)))................((((...(((.(.((.....((((((....))))))..((((((.(((....))).)))))))).).)))))))... ( -34.40) >DroYak_CAF1 6490 94 + 1 ----------------UACACUACCAUAAAUUCCGGAAUGGCCGAGGGAAAACAGGGCUGGACGUGCCUUUUGAUGCUCAUAUGUGUGAGCAUCACCGUGGGCACCGUCA ----------------.......................((((..(......)..)))).(((((((((..((((((((((....))))))))))....))))).)))). ( -33.50) >DroAna_CAF1 8940 102 + 1 AAGCCAGUGAAGAAAGU--------GAAGAUUCCAUCAUGGCUGAGGGUCAACAGGGAUGGACUUUCAUGCUGAUGUUCAUCUGCAUUUUUGUCACCCUGGGCAGCGUCA ..(((.((((.((((((--------(.((((..(((((..((((((((((..........)))))))).)))))))...)))).))))))).))))....)))....... ( -33.40) >consensus AGAUC___GAAGUACAUACACUACCAUAAAUUUCGGUAUGGCCGAGGGAAAACAGGGCUGGACAUGCCUUCUGAUGCUCAUAUGUGUGUGCAUCACCGUGGGCACCGUCA .................................(((....(((.(.((......((((.......))))..((((((.(((....))).)))))))).).))).)))... (-22.15 = -21.68 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:54 2006