Locus 735

Sequence ID 2R_DroMel_CAF1
Location 3,595,485 – 3,595,585
Length 100
Max. P 0.582177
window1289

overview

Window 9

Location 3,595,485 – 3,595,585
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -22.16
Consensus MFE -17.90
Energy contribution -18.98
Covariance contribution 1.08
Combinations/Pair 1.10
Mean z-score -1.40
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.582177
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3595485 100 - 20766785
CUGUAGGUGAAUCGACCAUAUACUAAUGCGUCGGUUGUAUGUGUGCAUGCACAUAAAUAUUUUUUCGACUUUGAAAACAACUAUGCAUGACAGAAAAUAA
((((.(((......)))........((((((.((((((.((((((....)))))).......(((((....))))))))))))))))).))))....... ( -25.70)
>DroSec_CAF1 389 100 - 1
CUGUAGGUGAAUCGACCAUAUGCUAAUGCGUCGGUUGUGUGUGUGCAUGCAAAUAAAUAUCUUUUCGACUUUGAAAACAACUAUGCAUGACAGAAAAUAA
((((.(((......)))........((((((.((((((((((....))))............(((((....))))))))))))))))).))))....... ( -20.40)
>DroSim_CAF1 389 96 - 1
CUGUAGGUGAAUCGACCAUAUGCUAAUGCGUCGGUUGU----GUGCAUGCACAUAAAUAUCUUUUCGACUUUGAAAACAACUAUGCAUGACAGAAAAUAA
((((.(((......)))........((((((.((((((----(((....)))..........(((((....))))))))))))))))).))))....... ( -22.30)
>DroEre_CAF1 351 100 - 1
CUGUAGGGGAAUCGACCAUAUGCAAAUCCGUCGGUUGUGUGUGCACAUGCACAUAAAUUUCUUUUCGACUUUAAAAACAACUAUGCAUGACAGAAAAUAA
((((.((........)).((((((.....(((((...(((((((....))))))).........)))))..((........))))))))))))....... ( -21.40)
>DroYak_CAF1 385 98 - 1
CUGUAGGCGAAUCAACCAUAUGCUAAUACGUCGGUUGUGUGUGC--AUGCACAUAAAUAUCUUUUCGACUUUGAAAACAACUAUGCGUGACAGAAAAUAA
((((.((((.((.....)).))))..(((((.(((((((((((.--...)))))........(((((....)))))))))))..)))))))))....... ( -21.00)
>consensus
CUGUAGGUGAAUCGACCAUAUGCUAAUGCGUCGGUUGUGUGUGUGCAUGCACAUAAAUAUCUUUUCGACUUUGAAAACAACUAUGCAUGACAGAAAAUAA
((((.((........))........((((((.((((((((((((....)))))))......((((((....))))))))))))))))).))))....... (-17.90 = -18.98 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:53 2006