Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,594,714 – 3,594,825 |
Length | 111 |
Max. P | 0.806865 |
Location | 3,594,714 – 3,594,825 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -32.64 |
Energy contribution | -33.44 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.14 |
Mean z-score | -1.46 |
Structure conservation index | 0.85 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3594714 111 + 20766785 CAAAGCGUUAUUGUGGUG-GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGGGAAAUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA ....(((....(((((..-(((..........(((....))).((((((((.(...........).))))))))...(((((......)))))....)))..))))).))). ( -34.00) >DroSec_CAF1 7370 112 + 1 CAAAGCGUUGUUGUGGUGGGCGAUUCGUUCUUGGCGAAAGCUUUUUCUCUACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA ...((((.((((((((.((((..(((((.....))))).)))).....))).))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... ( -43.10) >DroSim_CAF1 8580 112 + 1 CAAAGCGUUGUUGUGAUGGGCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA ...((((.(((((.(.((((.((.........(((....)))...)))))))))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... ( -42.40) >DroEre_CAF1 7729 111 + 1 CAAAGCGUUGUUGUGGUU-GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAAUACCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCAACGUA ....(((((((.(((((.-.............(((....)))..............)))))......(((((((((.(((((......)))))..)))))))))))))))). ( -41.69) >DroYak_CAF1 7652 111 + 1 CAAAGCGUUGUUGUGGUU-GCGGUUCGUUCUUGGCAAAAGCUUUUUCUCCACCAAUGCUGCUCAGCUGGCGACGUUCAGUCGUGCUUCCGACUCCAACGCUGCCGUACCGUA ...(((((((..((((..-(((((........(((....)))........)))...(((....)))..(((((.....)))))))..)).))..)))))))........... ( -30.99) >consensus CAAAGCGUUGUUGUGGUG_GCGAUUCGUUCUUGGCGAAAGCUUUUUCUCCACCAACAUCGCUCAGCUGGCGGCGUUCAGUCGCGCUCCCGACUCCAACGCUGCCGCACCGUA ...((((.((((((((...((..(((((.....))))).)).......))).))))).))))..((.(((((((((.(((((......)))))..)))))))))))...... (-32.64 = -33.44 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:52 2006