Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,589,872 – 3,589,975 |
Length | 103 |
Max. P | 0.980898 |
Location | 3,589,872 – 3,589,975 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -22.30 |
Energy contribution | -23.63 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.20 |
Mean z-score | -2.24 |
Structure conservation index | 0.64 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3589872 103 + 20766785 CGUGGAUGCCAGCAACA-------CACCAACAGCAGCAAUAGUUAAGACGACAACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAACAG .(((..((....)).))-------).......(((((....)))..(((((...((((((((((((((((....))))))..)))))))))).))))).....))..... ( -37.30) >DroSec_CAF1 2198 103 + 1 CGCGGAUGGAAGCAACA-------CGCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGCCAUUCCCGGCCAGCUGCUGAUGCUGGUCAAGGAGCAAGAG .((((.((....)).).-------))).....((..(....((....))(((.(((((((((..((.((((......)))).)))))))))).).)))..)..))..... ( -32.50) >DroSim_CAF1 2222 103 + 1 CGCGGAUGGAAGCAACA-------CGCCAACAGCAACAAUAGUGAAGACGACGACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCAAGAG .((((.((....)).).-------))).....((..(....((....))(((((((((((((((((((((....))))))..)))))))))).)))))..)..))..... ( -40.50) >DroEre_CAF1 2301 96 + 1 CGUAGAUGCAACUACAA-------CGCCAUCAGCAGCAAUAGUGAAGACG---ACAUCGGCGAUGCCGGGAAUUCCCGGUCAGUUGCUGAUGCUCGUCAAGGAGCA---- .((((......))))..-------.(((.(((..(....)..))).((((---(((((((((((((((((....))))))..)))))))))).)))))...).)).---- ( -39.10) >DroYak_CAF1 2264 96 + 1 CGUAGAUGAAACCAGCA-------CGCCUUCAGCAGCAAUAGUGAAGACG---ACAUCAGCGAUGCCGGGCAUUCCCGGCCAAUUGCUGAUGCUCGUCAAGGAGCA---- ..............((.-------..((((((..(....)..))))((((---(((((((((((((((((....))))))..)))))))))).)))))..)).)).---- ( -38.50) >DroAna_CAF1 2350 103 + 1 CAUCCACAUCAUCAUCAUCAAUAGCAGCAGAAGCAACCAUAGUAACCACAAGUCCAUCGGCG---GCGGCCACUCCAGGCCAUUUGUUGAUGCUCGUAAAAGAUAC---- ................(((....((((((..(((((.....((..((...........))..---))((((......))))..)))))..)))).))....)))..---- ( -20.50) >consensus CGUGGAUGCAAGCAACA_______CGCCAACAGCAACAAUAGUGAAGACGAC_ACAUCGGCGAUGCCGGGCAUUCCCGGCCAGUUGCUGAUGCUCGUCAAGGAGCA____ ..............................................((((....((((((((((((((((....))))))..))))))))))..))))............ (-22.30 = -23.63 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:51 2006