Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,574,330 – 3,574,427 |
Length | 97 |
Max. P | 0.967823 |
Location | 3,574,330 – 3,574,427 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.82 |
Mean single sequence MFE | -20.55 |
Consensus MFE | -18.49 |
Energy contribution | -19.16 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.90 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3574330 97 + 20766785 CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACC--------AACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUUAUGCACA--C ......((((...((((....))))....(((((((.(((.....--------...........)))..)))))))))))........................--. ( -23.49) >DroSec_CAF1 8024 101 + 1 CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACCAACUCACCAACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUCAU----A--C ......((((...((((....))))....(((((((.(((........................)))..)))))))))))...................----.--. ( -23.06) >DroYak_CAF1 8374 96 + 1 CACCACUGCCGAAGAUUUGC-AAUCGUUUGGCUCUCCGGCACACC--------ACUACACCGUCACCCAGAGAGCCGCCACUCACUCAAACACACUCAC--ACACAA .......((....(((....-.)))....(((((((.((...((.--------........))...)).))))))))).....................--...... ( -15.10) >consensus CACCACUGGCGAAGAUUUGCCAAUCGUUUGGCUCUCCGGCACACC________AACACACAUUCGCCCAGAGAGCCGCCACUCACUGAAACACACUCAU__ACA__C ......((((...((((....))))....(((((((.(((........................)))..)))))))))))........................... (-18.49 = -19.16 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:47 2006