| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,327,732 – 1,327,852 |
| Length | 120 |
| Max. P | 0.996858 |
| Location | 1,327,732 – 1,327,852 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.08 |
| Mean single sequence MFE | -41.98 |
| Consensus MFE | -36.74 |
| Energy contribution | -36.42 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.996858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1327732 120 + 20766785 CUCGCGUUGUUAAUGGCUUUCCACUGGCCGACAUUGCCUGUUGCAGGCCCACUUAAUUUAUCAACCAUGUAUCCUGCGGUUGACAGUGACAAGGCCGAGCCACUAGCAGCUGCGACUUUG .(((((((((((.((((((......((((..(((((.(..(((((((...((................))..)))))))..).)))))....)))))))))).))))))).))))..... ( -42.39) >DroSec_CAF1 46259 120 + 1 CUCGCGUUGUUAAUGGCUUUCCACUGGGCGACAUUGCCUGUUGCAGGCCCACUUAAUUUAUCAACCAUGUAUCCUGCGGUUGACAGUGACAAGGCCGAGCCACUAGCAGCUGCGACUUUG .(((((((((((.((((((........((((((.....)))))).((((((((.......((((((...........)))))).))))....)))))))))).))))))).))))..... ( -42.90) >DroSim_CAF1 25344 120 + 1 CUCGCGUUGUUAAUGGCUUUCCACUGGCCGACAUUGCCUGUUGCAGGCCCACUUCAUUUAUCAACCAUGUAUCCUGCGGUUGACAGUGACAAGGCCGAGCCACUAGCAGCUGCGACUUUG .(((((((((((.((((((......((((......(((((...))))).....(((((..((((((...........)))))).)))))...)))))))))).))))))).))))..... ( -43.90) >DroEre_CAF1 27437 116 + 1 ----CGUUGCUAAUGGCUCUCCACUGGCCGACAUCGCCUGUUGCAGGCCCACUUCAUUUAUCAGCCAAGUAUCCUGAGGUUGACAGUGACAAGGUCGAGCCACUGGCAGCUGCGACUUUG ----.(((((....((((..(((.((((((((...(((((...))))).....(((((..((((((.((....))..)))))).)))))....)))).)))).))).))))))))).... ( -42.00) >DroYak_CAF1 13523 120 + 1 GACUCGUUGUUAAUGGCUUUCCACUGGCCGAUGUUGCUUGUUGCAGGUCCACUUAAUUUAUCAACCAUGUAUCCUGCGGUUGACAGUGACAAGGCCGAGCCACUAGCAGCUGCGACUUUG .....(((((((.((((((......((((..(((..((.((((((((...((................))..)))))....)))))..))).)))))))))).))))))).......... ( -38.69) >consensus CUCGCGUUGUUAAUGGCUUUCCACUGGCCGACAUUGCCUGUUGCAGGCCCACUUAAUUUAUCAACCAUGUAUCCUGCGGUUGACAGUGACAAGGCCGAGCCACUAGCAGCUGCGACUUUG ..((((((((((.((((((......((((......(((((...))))).((((.......((((((...........)))))).))))....)))))))))).))))))).)))...... (-36.74 = -36.42 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:46 2006