| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,562,253 – 3,562,359 |
| Length | 106 |
| Max. P | 0.554971 |
| Location | 3,562,253 – 3,562,359 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.05 |
| Mean single sequence MFE | -33.92 |
| Consensus MFE | -21.44 |
| Energy contribution | -22.19 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3562253 106 + 20766785 UCGGCAUUCGAAUCGGGAGGGUAUCUUAGGUAUUAG-GAAAUGGCCAAAUGGCUUCCGCGGCAGAGGAAGUGAGCUGCCAAUGAUACGAUAUAUCCGACCAGCCGAC (((((....(...)((..((((((.((..(((((((-((...((((....)))))))..(((((..........)))))..)))))))).))))))..)).))))). ( -36.00) >DroPse_CAF1 16440 82 + 1 UUGGGAUUGGGAUCGUGAAGGUAU---------UAGAAAAAUUGUCAAAUGGCUUCAGUGGCGACGGAAGUGAGCUGCCAAUGAUACCAUA---------------- .......(((.(((((((((.(((---------(.((.......)).)))).)))).(..((.((....))..))..)..))))).)))..---------------- ( -22.60) >DroSec_CAF1 41309 106 + 1 UCGGCAUUCGAAUCGGGAGGGUAUCUUGGGUAUUAG-GAAAUGGCCAAAUGGCUUCCGCGGCAGAGGAAGUGAGCUGCCAAUGAUACGAUAUAUGCGACCAGCCGAC (((((..(((.(((((((((.(((.((((.((((..-..)))).))))))).)))))..(((((..........))))).......)))).....)))...))))). ( -36.00) >DroSim_CAF1 37628 98 + 1 UCGGCAUUCGAAUCGGGAGGGUAUCUUAGGUAUUAG-GAAAUGGCCAAAUGGCUUCCGCGGCAGAGGAAGUGAGCUGCCAAUGAUACGAUAUAU--------CCGAC (((.....))).(((((...(((((....(((((((-((...((((....)))))))..(((((..........)))))..))))))))))).)--------)))). ( -29.20) >DroEre_CAF1 28925 104 + 1 UCGGCAUUCGGAUCGGGAGGGUAUU--UGGUAUUAG-GAAAUUGCCAAAUGGCUUCCGCGGCGGAGGAAGUGAGCUGCCAAUGAUACGAUAUAGCCGACCAGCCGAC (((((..(((((((((((((.((((--(((((....-.....))))))))).)))))(((((...........)))))........))))....))))...))))). ( -41.20) >DroYak_CAF1 20130 104 + 1 UCGGCAUUCGAAUCGGGAGGGUAUU--UGGUAUUAG-GAAAUUGCCAAAUGGCUUCCGCGGCAGAGGAAGUGAGCUGCCAAUGAUACGAUAUAUCCGACCAGCCGAC (((((....(...)((..((((((.--(.(((((((-(((...(((....)))))))..(((((..........)))))..)))))).).))))))..)).))))). ( -38.50) >consensus UCGGCAUUCGAAUCGGGAGGGUAUC__AGGUAUUAG_GAAAUGGCCAAAUGGCUUCCGCGGCAGAGGAAGUGAGCUGCCAAUGAUACGAUAUAUCCGACCAGCCGAC (((((..(((.(((((((((.(((....(((............)))..))).)))))..(((((..........)))))..)))).)))............))))). (-21.44 = -22.19 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006