Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,560,651 – 3,560,743 |
Length | 92 |
Max. P | 0.937410 |
Location | 3,560,651 – 3,560,743 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.41 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -5.12 |
Energy contribution | -5.48 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.23 |
Structure conservation index | 0.25 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3560651 92 + 20766785 GUAGCGUUCUCUCCU---UUUACCACGCGUUUUUUCUU----AUAUGGAUAAUAUUCUAU-CCAUAUGAGCUUAGUUAUUCAAGAUUAUGACCCGCUUCC ..((((.........---.................(((----(((((((((......)))-)))))))))....(((((........))))).))))... ( -19.50) >DroSec_CAF1 39703 90 + 1 GUAGAGUUAUCUCCU---GUUACCAUGCGUU--UUCUU----AUAUGGAUAAUAUUCUAU-CCAUAUGAGCUUAGUUUUCCAAGAUUAUGAUCCGCUUCC ...(((....)))..---........(((..--(((((----(((((((((......)))-)))))))))..((((((....)))))).))..))).... ( -19.00) >DroSim_CAF1 35275 88 + 1 --AGAGUUAUCUCCU---GUUACAACGCGUU--UUCUU----AUAUGGAUAAUAUUCUAU-CCAUAUGAGCUUAGUUUUCCAAGAUUAUGAUCCGCUUCC --.(((....)))..---........(((..--(((((----(((((((((......)))-)))))))))..((((((....)))))).))..))).... ( -19.30) >DroEre_CAF1 27397 87 + 1 AUGGCGGUUUGUCUU---GUUGCUUUCCAUC--UU-------AUAGGGAUAAUAUUCCAUUCCAUAUGAGCUAAG-UUUUGGAGAUUAUGACCCGCUGCC ..((((((..(((..---..((.((((((.(--((-------((((((((........))))).)))))).....-...)))))).)).)))..)))))) ( -23.20) >DroYak_CAF1 18603 98 + 1 AUAGCGUUAUCCCUUGUUGUUGCUUUGCAUC--UUCUUACAAAUAUGGAUAGCAUUCUAUUCCAUAUGAGCUUACUUUUUGGAGAUUAUGACCCGCUGCA .(((((((((((....(((((((...)))..--.....))))....)))))))......(((((...(((....)))..)))))..........)))).. ( -20.51) >consensus AUAGCGUUAUCUCCU___GUUACCAUGCGUU__UUCUU____AUAUGGAUAAUAUUCUAU_CCAUAUGAGCUUAGUUUUUCAAGAUUAUGACCCGCUUCC ..((((......................................(((((......)))))..((((....(((........)))..))))...))))... ( -5.12 = -5.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:44 2006