Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,549,700 – 3,549,791 |
Length | 91 |
Max. P | 0.510238 |
Location | 3,549,700 – 3,549,791 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -21.23 |
Energy contribution | -21.32 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.13 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3549700 91 + 20766785 CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGAGCCAUAAGUACCCAUACCAUCCA----------UGCCCAUGCCCA-------G .....((((...))))((((....((((((((....))))))))(-((((....)))))....................----------.)))).......-------. ( -31.50) >DroVir_CAF1 24683 95 + 1 CAAUAUCCAAAUCCGAGUGCCCACUUGGCUGCGCGUUCGGACAGGCACACUCGAGCGCCAUAAGUACCCAUACC---CAUGCCCA----UGCCCAUGCCCA-------G ............((((((....))))))(((.((((..((.(((((.(......).)))....(((....))).---........----)))).)))).))-------) ( -18.90) >DroSec_CAF1 24124 100 + 1 CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCUCCAUAAGUAUCCAUACCAUCCA-UACCAUCCGUGCCCAUGCCCA-------G .....((((...))))((((.....(((((((....)))))))((-((.(..((.........(((....)))......-.....)).).))))..)))).-------. ( -29.05) >DroSim_CAF1 19839 100 + 1 CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCUCCAUAAGUACCCAUACCAUCCA-UACCAUCCGUGCCCAUGCCCA-------G .....((((...))))((((.(.(((((((((....)))))))))-(((....))).......................-........).)))).......-------. ( -29.00) >DroEre_CAF1 16801 107 + 1 CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCGAGCCCCAUAAGUACCCAUACCAUCCA-UGCCAUCCAUGCCCAUGCCCAUGCCCAUG .....((((...))))((((..((((((((((....)))))).((-(((....)))))...))))............((-((.....)))).....))))......... ( -32.40) >DroYak_CAF1 6994 95 + 1 CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG-GCUCUCAAGCCCCAUAAGUACCCAUACCAUCCA-UACCAUCCAUGC------------CCGUG .....((((...))))((((.....(((((((....)))))))((-(((....))))).....................-..........))------------))... ( -29.70) >consensus CAAUAUCCGAAUCGGAGGGCCCACUUGUCCGAGCGCUCGGACAGG_GCUCUCGAGCCCCAUAAGUACCCAUACCAUCCA_UACCAUCC_UGCCCAUGCCCA_______G ..............((((((...(((((((((....))))))))).))))))......................................................... (-21.23 = -21.32 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:43 2006